Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1870 ATGGAATACGGCAGTGGCAGCGGTGGGTCCCCTGGGGACTACCACCACGATGCTTCTGACTCCCAAGGGAGGCAGAAGCGCTACCATCGTCACACTGCTAATCAGATTCAAAGGCTCGAATCAATGTTCAAGGAGTGTCCCCATCCAGATGAGAAGCAAAGGATGCAGTTAAGCAGGGAGCTAGGCTTGGCCCCTAGACAGATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAAAGAGCTGATAACTGTTCACTGAGGGCAGAGAATGACAAAATAAGATGTGAGAACATAGCCATCAGAGAGGCTCTGAAGAATGTTATCTGCCCTTCTTGTGGTGGCCCTCCTCTCAACGAGGATTCCTACTTCGATGAGCAAAAGTTGCGATTGGAGAATGCCCAATTGAAAGAAGAGCTCGATAGAGTATCTAGCATTGCAGCTAAGTACATAGGAAGACCAATTTCCCAGCTTCCACCTGTTCATCCTATTCATATATCCTCTCTAGACTTGTCAATGGGAAGCCAAGGGTTAGGTGTTCCTTCCCTTGATCTTGATCTTCTCCCAGGGACTTCATTTATGCCAAATTTGCCATATCAACCTGCTAGTCTTTCCGACATGGACAAGTCCCTCATGTCAGACATTGCTGCAAATGCGATGGAAGAACTACTCAGGCTTCTGCAGACGAATGAACCATTGTGGATGAAGTCAAGCACAGATGGGAGAGATGTTCTTAATCTTGAAGCCTACGGAAGAATGTTCCCAAGGGCAAATAGTCACTTGAAGAACCCAAATGTCCGCATTGAAGCATCTAGAGATGCAGGAGTTGTAATTATGAATGGCTTAACTTTGGTTGGCATGTTTATGGACCCAAACAAGTGGATGGAGCTATTCCCTACAATTGTCTCAATGGCAAGAACGATTGAAGTAATATCTTCTGGAATGTTGGGTGGTCATAGTGGTTCTTTGCAATTGATGTATGTGGAGTTGCAAGTGCTTTCTCCACTAGTTCCAACCAGAGAGTTCTACTCTCTGCGTTACTGTCAGCAAATTGAGCAAGGCTTATGGGCAATAGTGGATGTTTCTTATGATTTTCCCCAAGATAACCAATTTGCTCCTCAATTTCGGTCTCACCGACTTCCATCTGGTTGCTTGATCCAGGACATGCCTAACGGGTATTCCAAGGTTACTTGGGTTGAACATGTAGAGATTGAAGATAAAACTCCAACTCATCGACTATATAGAAATCTTATCTATAATGGGTTGGCATTTGGAGCAGAAAGATGGCTTACTACTCTTCAGAGGATGTGTGAAAGATTTGCTTGTCTGATGGTGACAGGAAATTCAACCCGGGATCTTGGAGGAGTGATTCCATCACCGGAAGGCAAGAAGAGCATGATGAAACTTGCACAAAGAATGGTCACAAATTTCTGTGCAAGCATTAGCACGTCAACTGGTCACCGATGGACAACACTCTCTGGCTTGAACGAGGCTGGTGTCAGAGTCACTGTCCATAAGAGCACTGATCCCGGCCAACCTAACGGTGTAGTGTTAAGTGCAGCCACTACCATTTGGCTCCCCATTCCTCCTCAAACAGTATTTAATTTCTTCAAGGATGAGGCAAAAAGACCTCAGTGGGATGTTCTTTCAAACGGTAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGATCACACCCTGGTAACTGCATATCTGTTCTTAGAGTGAGGGAGTCAAGAACGCACCATACCATACTCGGTCATTTTCGGGCACAGATTTACATATCACTCCATGAAGAATGTATGGTTCGGGTATTGACTTCCAGTTCATAG 1845 0.4531 MEYGSGSGGSPGDYHHDASDSQGRQKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCSLRAENDKIRCENIAIREALKNVICPSCGGPPLNEDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVHPIHISSLDLSMGSQGLGVPSLDLDLLPGTSFMPNLPYQPASLSDMDKSLMSDIAANAMEELLRLLQTNEPLWMKSSTDGRDVLNLEAYGRMFPRANSHLKNPNVRIEASRDAGVVIMNGLTLVGMFMDPNKWMELFPTIVSMARTIEVISSGMLGGHSGSLQLMYVELQVLSPLVPTREFYSLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRSHRLPSGCLIQDMPNGYSKVTWVEHVEIEDKTPTHRLYRNLIYNGLAFGAERWLTTLQRMCERFACLMVTGNSTRDLGGVIPSPEGKKSMMKLAQRMVTNFCASISTSTGHRWTTLSGLNEAGVRVTVHKSTDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDEAKRPQWDVLSNGNAVQEVAHIANGSHPGNCISVLRVRESRTHHTILGHFRAQIYISLHEECMVRVLTSSS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1870 614 FunFam Homeobox-leucine zipper protein GLABRA 2 218 442 - -
Glsi01g1870 614 Gene3D - 217 442 IPR023393 -
Glsi01g1870 614 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Glsi01g1870 614 SUPERFAMILY Homeodomain-like 5 82 IPR009057 -
Glsi01g1870 614 CDD homeodomain 24 83 IPR001356 GO:0003677
Glsi01g1870 614 SMART START_1 218 443 IPR002913 GO:0008289
Glsi01g1870 614 Gene3D - 13 96 - -
Glsi01g1870 614 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 586 IPR042160 -
Glsi01g1870 614 SUPERFAMILY Bet v1-like 464 579 - -
Glsi01g1870 614 MobiDBLite consensus disorder prediction 1 31 - -
Glsi01g1870 614 CDD START_ArGLABRA2_like 213 442 - -
Glsi01g1870 614 ProSiteProfiles START domain profile. 209 446 IPR002913 GO:0008289
Glsi01g1870 614 Pfam START domain 219 443 IPR002913 GO:0008289
Glsi01g1870 614 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Glsi01g1870 614 Pfam Homeodomain 26 80 IPR001356 GO:0003677
Glsi01g1870 614 SUPERFAMILY Bet v1-like 210 444 - -
Glsi01g1870 614 Coils Coil 130 150 - -
Glsi01g1870 614 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Glsi01g1870 614 SMART HOX_1 24 86 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1870 Glsi-ChrGlsi01 82226854 82230592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1870 24 579 Homeobox Transcription Factor Family AT1G73360 68.607 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi01g1870 START 1.2e-49 CL0209