Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1867 ATGCAGGATCATGAAGAGGGCACAAGTGTAAATGACTCTGGCACTGCTGGTAACCGCTATTCCAGTGGTGGCTCACTATCCGATGAAGTTGTCCCATTGGAGGATAAAACTCCTAATGGACACAACCATACTCCCAAGGTGAGGAAGCCATATACCATTTCTAAGCAAAGGGAAAAGTGGACAGAGGCAGAGCATCAGAAGTTTCTTGAAGCTCTGAAACTGTATGGTCGTGGTTGGCGCCAAATTGAAGAACATATAGGTACTAAAACTGCAGTTCAGATAAGAAGCCATGCTCAGAAATTCTTCTCTAAGGTGGTGCGGGAATCTGATGGCTGTGCTGAAAATTCTATAAAACCAATTGATATTCCTCCTCCTCGGCCAAAGAGGAAACCCCTGCATCCATATCCCCGTAAAACAGTTTATTCTTTCAAAGGACACTCCATAGCAAATGAACCAGAGAGATCTCCGTCCCCAAACCTGCTATTTGCAGAGAAAGACACTCAATCTCCGACCTCTGTGTTATCTGCATTTCAGTCAGAAGCATTTGGATCAGCATTTTCAGAGCAGACTAACAGATGTCATTCGCCAAATTCTTGCACCACTGATGTTCACTCGGCCTGCTTATCACCTGTTGAAAAGGAAAATGATTGCATGACGTCTAACTCATCTGAGGAGGAGGAGAAAGGATCTCTAGCTTCTGTCTCTTTAGCTACTGGCTTGAACCTACATTTGTCGTCTATGAAGTCTGAGCTGAGTTCCAAGGAATCTGAATCCCTTACTGAAGATGCTGCTGATGCGCCTCATGTTGCAAGTATTAAGCTTTTTGGAAGATCTGTCTCCATGGTAGACAATCAGAAGTCAGTGGAGGTAGATGGGGAGAATATAAAGCCAATTACATGCAAATCTGATAAAGTGGATGCTGTTGAGAGTGAAAAGCTTGGCCAAGCATGGCCACCCAACCAACCAGATACGGAATTATCACTGAGCATGTGTAATAGTATTAACTGGAGCACACCGCCTGAAAGGGGAGACGAAGCAAAATCCACGGAATACCAGAAAGAGAACCTGTGCTTGGTTGAATCTGAACCTGATGAAGCTTTGCCACGGTGGAATTTGTACCCTCGTCTTCCAGTTTTTCACCTTAAGCCATGTAACCAAATTCTAAATCCTACACCTATTCGTCCCTCTTTGAAAGATAGAATGACAGATAAGGAAGGTTCTTGTACTGGTTCGAATACTGAATCAGTTTGTGAAATGGAAAATGGAGACAGAAACTCTGATGCTTATGATTCTCAATGCCAATCTTCTCATCATGAGGGAGGAACTGTACCCCTCAAGTCTCGAAGAGGGTTTGTACCATATAAAAGATGTTTAACTGAGAGAGATGCAAATTCAGTAATTAAAATTCATGCATTGAAAGAGAGGAAGGGGCAAAAAACTCGGGTATGCTCATAG 1455 0.4323 MQDHEEGTSVNDSGTAGNRYSSGGSLSDEVVPLEDKTPNGHNHTPKVRKPYTISKQREKWTEAEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGCAENSIKPIDIPPPRPKRKPLHPYPRKTVYSFKGHSIANEPERSPSPNLLFAEKDTQSPTSVLSAFQSEAFGSAFSEQTNRCHSPNSCTTDVHSACLSPVEKENDCMTSNSSEEEEKGSLASVSLATGLNLHLSSMKSELSSKESESLTEDAADAPHVASIKLFGRSVSMVDNQKSVEVDGENIKPITCKSDKVDAVESEKLGQAWPPNQPDTELSLSMCNSINWSTPPERGDEAKSTEYQKENLCLVESEPDEALPRWNLYPRLPVFHLKPCNQILNPTPIRPSLKDRMTDKEGSCTGSNTESVCEMENGDRNSDAYDSQCQSSHHEGGTVPLKSRRGFVPYKRCLTERDANSVIKIHALKERKGQKTRVCS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1867 484 Gene3D - 59 106 - -
Glsi01g1867 484 ProSiteProfiles SANT domain profile. 55 106 IPR017884 -
Glsi01g1867 484 MobiDBLite consensus disorder prediction 214 233 - -
Glsi01g1867 484 PANTHER SWI/SNF COMPLEX-RELATED 39 290 - -
Glsi01g1867 484 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Glsi01g1867 484 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Glsi01g1867 484 MobiDBLite consensus disorder prediction 426 441 - -
Glsi01g1867 484 MobiDBLite consensus disorder prediction 114 136 - -
Glsi01g1867 484 NCBIfam myb-like DNA-binding domain, SHAQKYF class 55 104 IPR006447 GO:0003677
Glsi01g1867 484 MobiDBLite consensus disorder prediction 1 53 - -
Glsi01g1867 484 SUPERFAMILY Homeodomain-like 51 105 IPR009057 -
Glsi01g1867 484 CDD SANT 59 102 IPR001005 -
Glsi01g1867 484 FunFam protein REVEILLE 6 isoform X1 59 107 - -
Glsi01g1867 484 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
Glsi01g1867 484 SMART sant 56 104 IPR001005 -
Glsi01g1867 484 MobiDBLite consensus disorder prediction 7 25 - -
Glsi01g1867 484 MobiDBLite consensus disorder prediction 392 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1867 Glsi-ChrGlsi01 82207545 82210531 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi01g1867 Myb_DNA-binding 2e-12 CL0123