Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1866 ATGGCTCCAGTGGGATTACCACCTGGTTTTAGGTTTCATCCAACCGATGAAGAGCTAGTCAATTATTACCTCAAGAGGAAGATCAATGGCGAAGAAATTGAACTCGATATCATTCCTGAGGTTGATCTCTACAAATGTGAACCATGGGAATTAGCAGAAAAATCGTTTTTGCCAAGTAGAGACCCAGAATGGTACTTCTTTGGACCAAGGGATAGGAAATACCCGAATGGGTTCAGAACGAATAGAGCAACTCGAGCTGGGTACTGGAAGTCTACTGGGAAAGACAGAAGAGTGACGAGCCAGAATAGAGCCATTGGGATGAAGAAGACTTTAGTTTACTACAGAGGGAGAGCTCCTCAAGGTATCAGAACTGACTGGGTCATGCACGAGTATCGCCTTGATGACAAAGACTTGGAGGATCCCTCCGGAATTCAGGACACTTATGCACTGTGCCGTGTCTTTAAGAAAAATGGAATCTGCTCTGAGGTAGAAGAGCAGCAAGGGCAATGCAGTAACTTGCTACTAATGGAGAGCTCCCAAACCCTAATTAATAATGAATGCGAAACCATGTCTCCAGAAGTAGCAGGTGGGGCATCATCTTCATGCTTTGAAGAAGAGGGAAAAGATGATTCATGGATGCAGTTCATCACAGATGATGCATGGTATTCTAATTCAATTGCAGCTATGACTGCTGGTGAAGAAGTCTCTCATATTACTTTTACAAATTAA 729 0.4335 MAPVGLPPGFRFHPTDEELVNYYLKRKINGEEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTSQNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKDLEDPSGIQDTYALCRVFKKNGICSEVEEQQGQCSNLLLMESSQTLINNECETMSPEVAGGASSSCFEEEGKDDSWMQFITDDAWYSNSIAAMTAGEEVSHITFTN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1866 242 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Glsi01g1866 242 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Glsi01g1866 242 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 190 - -
Glsi01g1866 242 FunFam Nac domain-containing protein 86 15 159 - -
Glsi01g1866 242 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Glsi01g1866 242 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1866 Glsi-ChrGlsi01 82202760 82206013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1866 1 235 NAC Transcription Factor Family AT3G17730 78.138 6.35e-136 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi01g1866 NAM 3.3e-40 No_clan