Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1865 ATGTCTTTAGCGAGCGAACTCACGAGTGAGCCAATAAAACATTTTCTTCTGACCACGTCATCGATCACGTGGAATGTTCCAGAAACTAATCCTCGTGGACCCCACTCGCTTCCAAAAGATGAATTAAAGGGGAGAGTGAGAGAGGAACTTGCAAGCGAAGGAGTTGAGGGTAGAAGGAAGTGGTTTTTCCTCCTTGCAGTATTCATCATGGTGAGAAAGAAGAGAACTGAAGTACCCAGTGGAGGCGAAACATCTGAGTCTCAGGAGAGTGGGGGCAGTGGTCGAGGTTCTCAACGTGTGGCTGAAAGGAGCACTCCAGCCCCTCAACAGGCAGTAGGAGGGGGAGGATCTCAAGGAGGTAGAGGTTGGGGTCCCCAAGGAGGACGTGGGGGTTATGGTGGAGGACGTGGTCGAGGAGTACCCCAACAGCAGTATGGTGGCCCTCCTGACTATCAGGGTAGGGGAAGGGGAGGACCCTCTCAGCAGGGAGGTCGTGGAGGATATGGTGGTGGACGTGGTGGTGGGGGCGTGCCCGGCGGCCGTGGTGTAGGACCTTCTTATGGTGGCCCGTCCCAACCACAAGCTCCCGAGCTGCACCAAGCAACCCCAGTTCCATATCAAGCTGGGGTGACTCCTCAGACCTCATTAACTGAGTCTGGTCCTTCTCAACAGCCTGAGACCTCTCAAGTGGAACAGCAAATTGGGCAGATGACAATTCATTCAGAAGCTGCTCCTGTTCCTCCTTCAAGTAAATCAGTGAGGTTTCCCCTTAGGCCTGGAAAGGGTAGCTATGGCACCAAGTGTGTAGTTAAGGCGAATCACTTCTTTGCTGAGTTACCTAAGAAGGATCTGCACCAGTACGATGTCACCATCACACCAGAAGTGACATCAAGAGGCGTCAACCGTGCTGTTATGGAGCAGCTGGTGAAACTATATCGGGAGTCTCATCTGGGAAAGAGGCTTCCTGCATATGATGGGCGCAAGAGTCTTTATACTGCTGGTCCACTTCCTTTTCTTTCGAAGGAGTTTAGAATCACCCTCCTTGATGAAGATGATGGATCAGGAGGGCCAAGGAGAGAGAGGGAGTTCAAAGTTGTGATAAAATTGGCTTCCCGAGCCGACCTACACCATCTGGAACTCTTCCTGCAGGGGAGGCAGACTGATGCTCCTCAGGAAGCTCTTCAGGTTCTTGACATTGTTCTGCGTGAACTACCCACCACTAGGTATTGTCCTGTTGGAAGATCATTTTATTCACCCGATCTAGGTAGAAGGCAACCATTGGGTGAGGGATTGGAAAGCTGGCGTGGCTTCTATCAAAGTATTCGTCCCACTCAGATGGGATTATCTCTCAACATTGATATGTCCTCCACTGCATTTATTGAGCCATTACCAGTGATTGAATTTGTGACTCAGCTGCTCAACAAGGATGTCTCTGCCCGACCATTGTCTGATGCTGATCGTGTAAAGATCAAGAAAGCACTTCGAGGTGTCAAAGTTGAAGTAACACATAGGGGAAATATGAGAAGAAAATATCGCATCTCTGGTCTGACTTCGCAGGCCACAAGAGAGCTGACATTCCCTGTTGATGAGAGGGGAACAATGAAATCTGTTGTGGAGTATTTCTCTGAGACGTATGGCTTTGTCATTCAACATACTCAGTGGCCTTGCTTGCAAGTGGGCAATACACAGAGACCAAACTATTTACCAATGGAGGTTTGCAAGATAGTAGAAGGTCAAAGGTACTCAAAGAGGTTGAATGAAAGGCAGATTACTGCTCTACTCAAAGTCACATGCCAGCGTCCTCCTGAGAGGGAGCGTGATATTGTGCAGACGGTTCGTCATAATGCTTATCACGAGGATCCTTATGCCAAAGAGTTTGGAATTAAAATTAGTGAGAAGCTTGCTCAAGTTGAAGCTCGCATCCTCCCTGCACCTTGGCTTAAATATCACGATACAGGTAGAGAAAAGGATTGTCTGCCTCAAGTTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGCGGAACGGTTAATCACTGGATCTGCATAAATTTTTCAAGGATTGTTCAAGATAGTGTGGCACGTGGGTTTTGTCAAGAACTTGCTCAAATGTGTTATATATCTGGCATGGCATTCAACCCAGAGTCAGTACTTCCCCCCCTCAGTGCCCGCCCTGATCAGGTGGATAAGGTTCTTAAAACACGCTATCATGATGCAAAAACCAAACTGCAAGGAAAGGAGCTTGATCTGCTTATTGTTATTTTGCCTGATAATAATGGTTCTCTTTATGGTGACCTGAAACGTATTTGTGAGACAGATCTTGGGGTTGTTTCTCAGTGCTGCTTGACTAAGCATGTCTTTAAAATGAACAAGCAGTACCTTGCAAATGTCTCTTTGAAAATTAATGTGAAGGTTGGTGGAAGAAACACCGTGCTTGTTGATGCAATTTCAAGACGTATACCTTTAGTCAGTGACCGGCCTACAATTATTTTTGGAGCTGATGTAACTCATCCACATCCTGGAGAGGATTCAAGTCCATCAATAGCAGCTGTTGTGGCCTCTCAAGATTGGCCTGAAATTACAAAGTATGCTGGCTTGGTGTGTGCTCAAGCACATCGACAAGAGCTCATTCAGGACCTTTTCAAGCAATGGCAAGATCCAGTGAGGGGAACAGTAACTGGTGGAATGATCAAGGAACTTCTCATATCTTTCCGAAGGGCCACAGGGCAGAAGCCGCAACGCATCATATTTTACAGGGATGGTGTGAGTGAGGGGCAGTTCTATCAGGTTTTACTGTTTGAGCTTGATGCTATACGCAAGGCATGTGCATCCCTTGAACCTAATTATCAGCCTCCTGTCACTTTTGTGGTGGTTCAAAAGCGCCATCACACAAGATTGTTTGCCAACCACCATCAAGACAGGAGTTCTGTTGACCGGAGTGGGAATATATTGCCTGGCACTGTGGTAGACTCAAAAATCTGCCATCCAACTGAGTTTGACTTTTACCTTTGTAGCCATGCCGGGATACAGGGCACAAGTCGTCCAGCGCATTACCATGTATTATGGGATGAAAACAATTTTACAGCTGATGCACTACAATCATTAACGAACAACCTTTGTTACACTTATGCAAGATGCACACGTTCTGTTTCAATTGTGCCCCCTGCATATTATGCACATTTGGCTGCCTTCCGAGCTCGATTTTATATGGAACCTGAGACATCAGATAGTGGGTCTATGACAAGTAGTGCTGCTGCTGGACGAGGAATAGGTGGTCCAGGACGTAGCACTCGGCCACCTGGTGCCAGTGCTGCCGTTAGGCCCCTTCCAGCTCTTAAGGAGAATGTGAAGAGGGTTATGTTTTATTGTTAA 3375 0.472 MSLASELTSEPIKHFLLTTSSITWNVPETNPRGPHSLPKDELKGRVREELASEGVEGRRKWFFLLAVFIMVRKKRTEVPSGGETSESQESGGSGRGSQRVAERSTPAPQQAVGGGGSQGGRGWGPQGGRGGYGGGRGRGVPQQQYGGPPDYQGRGRGGPSQQGGRGGYGGGRGGGGVPGGRGVGPSYGGPSQPQAPELHQATPVPYQAGVTPQTSLTESGPSQQPETSQVEQQIGQMTIHSEAAPVPPSSKSVRFPLRPGKGSYGTKCVVKANHFFAELPKKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDEDDGSGGPRREREFKVVIKLASRADLHHLELFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTQLLNKDVSARPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFSETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPPERERDIVQTVRHNAYHEDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRIVQDSVARGFCQELAQMCYISGMAFNPESVLPPLSARPDQVDKVLKTRYHDAKTKLQGKELDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVFKMNKQYLANVSLKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANHHQDRSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSSAAAGRGIGGPGRSTRPPGASAAVRPLPALKENVKRVMFYC 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1865 1124 CDD PAZ_argonaute_like 462 576 - -
Glsi01g1865 1124 SUPERFAMILY PAZ domain 269 608 IPR036085 GO:0005515
Glsi01g1865 1124 Gene3D - 820 1124 IPR036397 GO:0003676
Glsi01g1865 1124 FunFam protein argonaute 10-like 820 1124 - -
Glsi01g1865 1124 SMART DUF1785_2 410 462 IPR014811 -
Glsi01g1865 1124 FunFam Argonaute 10 641 814 - -
Glsi01g1865 1124 SUPERFAMILY Ribonuclease H-like 737 1072 IPR012337 -
Glsi01g1865 1124 SMART Piwi_a_2 751 1072 IPR003165 GO:0003676
Glsi01g1865 1124 MobiDBLite consensus disorder prediction 1076 1106 - -
Glsi01g1865 1124 Pfam N-terminal domain of argonaute 266 401 IPR032474 -
Glsi01g1865 1124 FunFam Protein argonaute-2 456 582 - -
Glsi01g1865 1124 Pfam PAZ domain 467 592 IPR003100 GO:0005515
Glsi01g1865 1124 Pfam Mid domain of argonaute 660 735 IPR032473 -
Glsi01g1865 1124 ProSiteProfiles Piwi domain profile. 751 1072 IPR003165 GO:0003676
Glsi01g1865 1124 Gene3D - 641 814 - -
Glsi01g1865 1124 Gene3D paz domain 456 581 - -
Glsi01g1865 1124 MobiDBLite consensus disorder prediction 206 233 - -
Glsi01g1865 1124 SMART PAZ_2_a_3 467 599 IPR003100 GO:0005515
Glsi01g1865 1124 Pfam Argonaute linker 2 domain 603 649 IPR032472 -
Glsi01g1865 1124 ProSiteProfiles PAZ domain profile. 463 577 IPR003100 GO:0005515
Glsi01g1865 1124 MobiDBLite consensus disorder prediction 76 233 - -
Glsi01g1865 1124 Pfam Argonaute linker 1 domain 411 461 IPR014811 -
Glsi01g1865 1124 CDD Piwi_ago-like 621 1071 IPR045246 -
Glsi01g1865 1124 Pfam Glycine-rich region of argonaut 146 245 IPR024357 -
Glsi01g1865 1124 MobiDBLite consensus disorder prediction 81 105 - -
Glsi01g1865 1124 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 242 1073 - -
Glsi01g1865 1124 Pfam Piwi domain 752 1071 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1865 Glsi-ChrGlsi01 82178940 82187864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1865 150 1124 Eukaryotic Initiation Factors Gene Family AT1G48410 81.892 0.0 1625