Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1850 ATGGCTTCGAGAGGAGCAAACATGGTGCTGTCGAGGGCAAATAGGATGAAGGCGAAGTTGCAGTCGGCACTGGAAGCCACCTTGTTGGAAGTAGAAGACGTGTCGTACCAGCATGCGGGTCACGCTGCCGTCAAAGGAACCTCCGGGGAGGAGACCCACTTCAATCTGAAGATCGTCTCGCCCAAATTTGATGGCCAGAGCCTCGTGAAACGGCACCGCATGGTCTACGACTTGCTCGCCGATGAGCTTCAATCTGGCTTGCACGCACTCTCCATTGTGGCCAAGACACCACAGGAAACCGGGAAACCACTAAGGACCAGCTCTGATAAGACCCCTAAGTTAGGCTGCCGGCCCTGACTCTGCATCACGGTCCATCACTTTGCTGTGTATTGGTGGAGGCATTTACTAGAGAATCTCTTGGTAGTGGCTTGTGTATTTGTTTCAGAGCTAGAGAAAATTCCACCTTTTCTTTCAAAAGAGCAGCCTAAAAGTACATGGGACGATGAAGATGTGGATGAAAATGATGTGAAGGAATCATGGGAGGATGAAGATGAACCTGCTCCGGCACCTGCAGCACCTGCTGTGAAATCAACTGATAAGGCTCTTAAAAAACCTTCTGAAAAAGTTAGTGAAAAAAAGGGGAAAAAAGTAGAACCAGAAAAGGAAGAACCATTGGATCCTGTGGCTGAAAAGCTTCGCCAACAAAGATTGATTGAGGAAGCAGATTACAAGTCCACCAAAGAATTGTTTGGCGGGAGAGGCGATGAAAAGACTCTTGATAATTTTATTCCCAAATCTGAGAGTGATTTTTTGGAATATGCAGAACTCATCTCATACAAGCTCCGTCCTTTTGAGAAAAGTTATCATTACATGGCTTTACTGAAGGCAGTTATGAGACTATCTATGGCTTCTCTGAAAGGAGCAGATGCAAAAGATATTGCATCTTCAATCACTGCAATTGCAAATGAAAAGATAAAAGCGGAGAAAGAAGCCAATGCTGGTAAAAAGAAGACGGGTGCCAAGAAAAAGCAGCTTCATGTTGACAGACCCGATGATGATTTGGTTGCTACTCCGTATGATGCTCTGGATGATTATGATTTCATACTCTGCATTGGAGCCTTAGATGACCTTTGCTCATATGCAGCATATTCTGATGGGGCAGCAGACATGACCTTTGGTGCACATACACGAGTTTGTCCACACAAACCTTATTATAATAATGGTCCTGAAAGGAGTATGGCGAAATTTGAGCTAGGGTTTCGCACGCAACGCTGCTTCATCTGCCTCGCCGCCTCGTCTCTGTTTCTGCTCATAACGGTAACTTCCTCTGCTTTTCTTTCTATCTGTCTCTGTTTTTGGTTGTTATTCGACACTACTTGTTCAAAAATGGCTGATGGTCATGAGACTGATAAGAACATTGAGGTATGGAAAATCAAAAAATTGATCAAAGCACTTGAGGCTGCTCGAGGAAATGGGACAAGTATGATTTCGCTTATCATGCCCCCACGTGATCAAGTATCTCGTGTTACTAAGATGCTTGGTGATGAGTTTGGAACTGCTTCAAACATAAAAAGCAGGGTGAATCGGCAGTCTGTCCTTGGTGCAATCACTTCTGCTCAGCAGAGGCTTAAGCTTTATAACAAGGTTCCTCCAAATGGGCTTGTTTTATATACCGGGACAATTGTAACGGAAGATGGTAAGGAAAAGAAGGTGACTATTGATTTTGAACCTTTCAGGCCTATCAATGCATCACTCTACCTTTGTGACAACAAGTTTCACACAGAGGCTCTAAATGAGCTCCTAGAGTCTGATGACAAGTTTGGTTTTATTGTCATGGATGGCAATGGTACCCTTTTTGGGACATTGAGCGGTAATACAAGAGAGGTGCTTCATAAATTTAGTGTGGATCTCCCAAAGAAACATGGAAGAGGAGGGCAGTCAGCCCTACGATTTGCTCGTCTTCGAATGGAGAAGCGTCATAACTATGTGAGGAAGACTGCAGAGCTTGCAACACAGTTTTATATCAATCCTGCTACCAGTCAGCCCAATGTTTCAGGATTAATTCTTGCTGGTTCTGCTGATTTCAAAACTGAGCTTAGTCAGTCAGATATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTTGATGTATCTTATGGAGGGGAGAATGGCTTCAATCAGGCTATTGAACTATCGGCAGAGATTCTGTCCAATGTGAAGTTCATCCAGGAGAAACGCTTGATTGGAAAGTACTTTGAGGAGATTAGCCAGGATACTGGGAAGTATGTTTTTGGGGTTGATGATACTCTAAAAGCTCTGGAGATGGGTGCTGTTGAGACACTTATTGTCTGGGAAAATCTGGATATTAGTAGGTATGTCTTAAAACATAGCACTAGTGGTGAGATTGTTATAAAGCACTTCAACAAGGAACAAGAGGCAAACCAAGACAATTTCCGGGATTCTGCAAACAATGCTGAATATGAAGTTCAGGAAAAGACGTCTCTCCTTGAGTGGTTTGCAAACGAGTACAGACGGTTTGGTTGCTCTCTTGAGTTTGTCACTAATAAATCACAAGAAGGTTCACAGTTTTGCAGGGGTTTTGGTGGCATAGGGGGGATCCTGCGTTACCAGCTTGATATGAGATCATTTGATGAATTCTCTGATGATGGTGAAGTGTATGGTGATTCTGAATAG 2700 0.4363 MASRGANMVLSRANRMKAKLQSALEATLLEVEDVSYQHAGHAAVKGTSGEETHFNLKIVSPKFDGQSLVKRHRMVYDLLADELQSGLHALSIVAKTPQETGKPLRTSSDKTPKLGCRPXLCITVHHFAVYWWRHLLENLLVVACVFVSELEKIPPFLSKEQPKSTWDDEDVDENDVKESWEDEDEPAPAPAAPAVKSTDKALKKPSEKVSEKKGKKVEPEKEEPLDPVAEKLRQQRLIEEADYKSTKELFGGRGDEKTLDNFIPKSESDFLEYAELISYKLRPFEKSYHYMALLKAVMRLSMASLKGADAKDIASSITAIANEKIKAEKEANAGKKKTGAKKKQLHVDRPDDDLVATPYDALDDYDFILCIGALDDLCSYAAYSDGAADMTFGAHTRVCPHKPYYNNGPERSMAKFELGFRTQRCFICLAASSLFLLITVTSSAFLSICLCFWLLFDTTCSKMADGHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDISRYVLKHSTSGEIVIKHFNKEQEANQDNFRDSANNAEYEVQEKTSLLEWFANEYRRFGCSLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEVYGDSE 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1850 899 SMART eRF1_1_2 466 602 IPR005140 -
Glsi01g1850 899 MobiDBLite consensus disorder prediction 200 230 - -
Glsi01g1850 899 SUPERFAMILY BolA-like 11 101 IPR036065 -
Glsi01g1850 899 FunFam Eukaryotic translation initiation factor 3 subunit J 257 333 - -
Glsi01g1850 899 MobiDBLite consensus disorder prediction 159 230 - -
Glsi01g1850 899 Pfam eRF1 domain 3 743 880 IPR005142 -
Glsi01g1850 899 FunFam SufE-like protein, chloroplastic 10 102 - -
Glsi01g1850 899 Gene3D - 10 102 IPR036065 -
Glsi01g1850 899 FunFam Eukaryotic peptide chain release factor subunit 1 464 597 - -
Glsi01g1850 899 Gene3D eRF1 domain 1 460 597 IPR024049 -
Glsi01g1850 899 Pfam eRF1 domain 1 480 600 IPR005140 -
Glsi01g1850 899 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 466 891 IPR004403 GO:0003747|GO:0006415
Glsi01g1850 899 Gene3D eRF1 domain 2 598 739 IPR042226 -
Glsi01g1850 899 FunFam Eukaryotic peptide chain release factor subunit 1 598 739 - -
Glsi01g1850 899 FunFam Peptide chain release factor subunit 1 741 899 - -
Glsi01g1850 899 Gene3D Eukaryotic translation initiation factor 3 like domains 257 333 IPR023194 -
Glsi01g1850 899 SUPERFAMILY L30e-like 740 882 IPR029064 -
Glsi01g1850 899 Pfam BolA-like protein 20 99 IPR002634 -
Glsi01g1850 899 SUPERFAMILY Translational machinery components 604 738 - -
Glsi01g1850 899 Pfam Translation initiation factor eIF3 subunit 162 365 IPR013906 GO:0003743|GO:0005737|GO:0005852
Glsi01g1850 899 MobiDBLite consensus disorder prediction 167 182 - -
Glsi01g1850 899 Hamap Eukaryotic translation initiation factor 3 subunit J [EIF3J]. 148 368 IPR013906 GO:0003743|GO:0005737|GO:0005852
Glsi01g1850 899 Gene3D - 741 899 IPR029064 -
Glsi01g1850 899 NCBIfam peptide chain release factor aRF-1 475 879 IPR004403 GO:0003747|GO:0006415
Glsi01g1850 899 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 468 602 IPR024049 -
Glsi01g1850 899 Pfam eRF1 domain 2 606 739 IPR005141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1850 Glsi-ChrGlsi01 82059377 82077889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1850 463 899 Eukaryotic Initiation Factors Gene Family AT3G26618 90.160 0.0 820