Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1849 ATGTCTTCAGCCGGCGGCGACGGCGGCGGGAGCGGTGGTGGAGGCGGCGTCACCTCCGGCGCTCCTCAACTCTATTTCTGCTACCAGTGCAACTCCACCGTCTCTCTTACGCCTTCCTCTTCCTCTGAACCCGTCTGCCCCAATTGCAATGCTGGCTTCATCGAGGAAGTCGACAATCCAATTCCCAATCCCAGCCCTAATCCTGCTAATCCCTTCTTGTCTTTCTCCTCCGAGTTTGGGGGCGGTAGTGGTGGCTTTCCTCTTATGTTCACTGCCTCTTCCACCGGCGGCGGCGGGGGAGGCGGTGCCAGTGGGCCGATATTCGACGATCTCTCTGCCCTCTTTGGTGGTGCACCTAACCGATCGTCTCCATTCGGAGAAACTGATGCGTTCAACCCTTTTGTGTTTCTTCAGAACTATATTCAAACCCTGAGAGCCGGTGGTGCTAATGTTCAATTTGTGATAGACAACTCCGGAGACCCAAGTGGAAACTTCCGTCTTCCCACAAATCTCAATTTTGGTGATTACTTTTTCGGACCTGGTCTTGAGCAATTGATTCAACAGCTAGCGGAGAACGATCCGAATCGATATGGGACTCCCCCAGCATCGAAATCTGCCATCGAGGGGCTCCCTAATATTAAGATCTCAGAGGAGTTGTTGGCTTCAGATTCATCGCAGTGTGCAGTGTGTAAAGACACATTTGAGCTGGGAGAACAGGCGAAACAGATGCCATGTAAACATATTTATCATTCAGATTGTATTGTGCCTTGGTTGGAATTGCACAATTCTTGTCCCGTTTGCCGGTACGAGTTGCCAACTGATGATCCTGACTACGAGCAAAGAACTCGTGAGACCTCTGTCCTGGTGAATCAAAACCAATCTGCGGGGGCCGGTGGGTCTGCTAATTCTTCTGACGGCGGTAATAGTGGTGTTGCTGGTGGAAGTGGTAGTGCAGCATCTGGAGATGACATACAGTCCCCTAGAGAGCGCAGGTTCAGGTGGGGAATCAAATCCTGGAAGCAGGGGAAACCAGAATCTTGA 1041 0.5168 MSSAGGDGGGSGGGGGVTSGAPQLYFCYQCNSTVSLTPSSSSEPVCPNCNAGFIEEVDNPIPNPSPNPANPFLSFSSEFGGGSGGFPLMFTASSTGGGGGGGASGPIFDDLSALFGGAPNRSSPFGETDAFNPFVFLQNYIQTLRAGGANVQFVIDNSGDPSGNFRLPTNLNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPNIKISEELLASDSSQCAVCKDTFELGEQAKQMPCKHIYHSDCIVPWLELHNSCPVCRYELPTDDPDYEQRTRETSVLVNQNQSAGAGGSANSSDGGNSGVAGGSGSAASGDDIQSPRERRFRWGIKSWKQGKPES 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1849 346 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 121 272 - -
Glsi01g1849 346 MobiDBLite consensus disorder prediction 324 346 - -
Glsi01g1849 346 FunFam E3 ubiquitin-protein ligase RING1-like 188 274 - -
Glsi01g1849 346 MobiDBLite consensus disorder prediction 293 322 - -
Glsi01g1849 346 SMART ring_2 227 267 IPR001841 -
Glsi01g1849 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 274 IPR013083 -
Glsi01g1849 346 MobiDBLite consensus disorder prediction 293 346 - -
Glsi01g1849 346 Pfam Ring finger domain 226 268 IPR001841 -
Glsi01g1849 346 CDD RING-H2_RNF126-like 226 268 - -
Glsi01g1849 346 ProSiteProfiles Zinc finger RING-type profile. 227 268 IPR001841 -
Glsi01g1849 346 Pfam zinc-ribbon 23 56 IPR039525 GO:0061630
Glsi01g1849 346 SUPERFAMILY RING/U-box 206 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1849 Glsi-ChrGlsi01 82050706 82051838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1849 168 283 C3H Transcription Factor Family AT5G01980 50.862 4.02e-36 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g1849 01 82050706 82051838 Glsi01g1849 01 82050706 82051838 ECH