Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1743 ATGGCTAGGCACAGCTCTTGCTATTCACCCTTTGTATTTGACTATTCTTCAGTCAATGCAGAACTAGATTCCATTTCTCAACCGGCCGAAAATGGGTCCGTGAAAAGAAGCTTCCGAGCATTTCTTGCGAGACCTCTGGACCACGCGCCTGGTTCCGCATCCATTATGGTCGTGAGTGGGGGGAAGCCATTGAAGCGGATGGAGAGTAGAGCTACAGTTGATTTCTACGATTTCCTCACTTTTCTGTCGCCGTCACTAGCCGAGGCGGACGACTTCTCCGGTGGACCCTTCCGGACGAATGTGCGCTCGTTCCTGTCGAAACACGCGCTGCTACCACCGCCGTCGGCGTTGTTCCGTCACCTGCTGACGTGGCAGATTCTGTTCCGAGTCGGAGAGTTGACGGAAGGGCCGGACTCTACGCCGGCGGTGGTCTGTCTCGATGTTGTGGAGGAGGATGTGGCCAGATCCAGATCAGTCTACTGCGATCAGTGTCGAGTTGTTGGTTGGAGTGAGCATCCAGTATGCGGGAAACGTTACCATTTTATAATCAAGGCTGATGGTAGCTCCATTGGTGGGTACCACAAGCCATGTATGTGCTGTGGAGATATATTGCATTTGTCAGAATCCAAGTGCAAGTCATGCAACCATGTGACAACCACTGATGATGTTGAAGACTGGGTGTATCAACAGTTAGAAAACACTACTCATCTTTTACATGGCGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGGGAAGGGGGCTCAAGAATTCTTTCTGGCTGCCATATCATGAACTTTTGGGATCGCCTCTGCAAGGCACTTGGAGTCAGAAAAGTTAGTGTAATGGACGTTTCAAAGAAATATGGGCTGGAGTACCGCCTGATCCATGCAATTACAGAGGGGCGTCCCTGGTATGGTAACTGGGGCTATCAATTTGGCTCTGGTAGCTATGGTCTCACTCATGAATCATATGAGTCTGCTATTGATTGCCTGTCCAATTTACCCTTGTCCATATTCCTCTCTCACGGACAAAGACCTGACTCTCGTTTGCAGCACACAATCTCATATTACCGGTCTTTGTCAGACACTGAGCTTGTAAATATAAGGGACCTTTTTTGTTTATTGACGGGTTTGATTCATGATGCTTGCATGACAGTGTCAAGCAATGATGATATCACCTGCAAGAAGCGCCGCTTTGATGCTGCAGGAGTTTCATGTTTGTGGGCAAAGAGTGATGTTGAACGTATGGAGGGAGCAATGCTCAGAGTGCTGCGTGCAGTGTCCGGGTCTAATTGGGTTAGCTGCCGTGCTCTCAGGGGTGCTGTCTACAAGGTGGGCTCTCCAGAGCTGCTTGATTACTGCCTTGGGGACCTGGGAGGAAAAGTGATCTTTGGAGGAATGGTTGTTAATACCCGATGCAATCCGAGTACTGGTGCTACTGAGTACAGACTGGAGGAAGGGAATGACTTTTGCTATGGGATCACAGCAGGCAATAAATCTTCGTGCTCTAAGTATCCATCTGAAGAGAATCTCCTACTAGACTTGAGATATTTATACGAGTCTTTGCTTCATCCTCAGATGATGCTGATCTATGAGCCAGAGGGGACAAGGACTGTTGCAATGAGCTCTGCTCAGAAACTCCTTGACTGCAAGCAGTTTGTAAAAGATTATAGGCCTGAGATGTTGCCAATGACAAACTCGTATAGAATACGCCTCTCATGTCAAGTAGAACTCATTGATGAATCTGAAGAGTCTGCTGCAAGCCCTCCCCCAGAGTTAATTGTCCTGCCCATTAGTGCCACTGTCTCTGACCTCAAGATCGAAGCATCAAATGCTTTTAAAGATGTATATGTCATGTTTAAAAAATTTCAAGTTGATGACCTACTTGGCTATAGTGGTGTAGATGATTCCACCCAGGTCAAGCTCTTGTCAGGATCAATAGAAGTGGTTCGTGTCCGAGGAAGATGCATTGGAAAGAATGGGTTGAGCAAGTTCCAAATGGAACGTGGAATTGAGAGGTGGACTGTGGATTGCAGCTGCGGGGCTAAAGATGATGATGGGGAGAGAATGTTGGCATGTGATGTATGTGGAGTGTGGCAGCACACTCGGTGTTCTGGTATTCATGATGCCGATCCTGTCCCTTCGCAGTTTGTTTGCCCAAGATGCCAAAATTTTGACTTGAAACCGAAATCTATTGGACACTGCATAGATGACACAGTGACTAGCATTAACACTAACAGTAGTTGCTTTGGAAACAGCTTGCTAATGCCTTCTGATGTTCGCTGA 2301 0.4754 MARHSSCYSPFVFDYSSVNAELDSISQPAENGSVKRSFRAFLARPLDHAPGSASIMVVSGGKPLKRMESRATVDFYDFLTFLSPSLAEADDFSGGPFRTNVRSFLSKHALLPPPSALFRHLLTWQILFRVGELTEGPDSTPAVVCLDVVEEDVARSRSVYCDQCRVVGWSEHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYQQLENTTHLLHGVVHANGYGHLLRVNGREGGSRILSGCHIMNFWDRLCKALGVRKVSVMDVSKKYGLEYRLIHAITEGRPWYGNWGYQFGSGSYGLTHESYESAIDCLSNLPLSIFLSHGQRPDSRLQHTISYYRSLSDTELVNIRDLFCLLTGLIHDACMTVSSNDDITCKKRRFDAAGVSCLWAKSDVERMEGAMLRVLRAVSGSNWVSCRALRGAVYKVGSPELLDYCLGDLGGKVIFGGMVVNTRCNPSTGATEYRLEEGNDFCYGITAGNKSSCSKYPSEENLLLDLRYLYESLLHPQMMLIYEPEGTRTVAMSSAQKLLDCKQFVKDYRPEMLPMTNSYRIRLSCQVELIDESEESAASPPPELIVLPISATVSDLKIEASNAFKDVYVMFKKFQVDDLLGYSGVDDSTQVKLLSGSIEVVRVRGRCIGKNGLSKFQMERGIERWTVDCSCGAKDDDGERMLACDVCGVWQHTRCSGIHDADPVPSQFVCPRCQNFDLKPKSIGHCIDDTVTSINTNSSCFGNSLLMPSDVR 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1743 766 ProSitePatterns Zinc finger PHD-type signature. 683 727 IPR019786 -
Glsi01g1743 766 SMART PHD_3 682 728 IPR001965 -
Glsi01g1743 766 CDD PHD_MMD1_like 682 727 - -
Glsi01g1743 766 ProSitePatterns Uncharacterized protein family UPF0054 signature. 239 249 IPR020549 -
Glsi01g1743 766 Pfam PHD-finger 683 729 IPR019787 -
Glsi01g1743 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 731 IPR013083 -
Glsi01g1743 766 SUPERFAMILY FYVE/PHD zinc finger 672 729 IPR011011 -
Glsi01g1743 766 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 73 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1743 Glsi-ChrGlsi01 79895534 79903728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1743 132 727 PHD Transcription Factor Family AT5G22260 29.860 1.29e-86 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi01g1743 PHD 6.5e-09 CL0390