Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1742 ATGAAATCTAGGAAACTTTCAAAGGGCAGAGTGATGGAAGGAAATGAGAAATTGTCTTGTTACAAAGTTGGCTCTTTACCGACTCTTTTTTACATACCCAACTTCTTCACAGATAGTGAACAGACTTTTCTTTTGAACAATATATATGGAGCTTCTCCATCAAAATGGAAGTCATTGAAGAATAGAAGGCTACAGAACTGGGGTGGTGTGGTGCATGAGAAAGGTCTTCTACCTCAAGTTTTGCCTCCATGGTTAACAAACCTTACACACAAAATATACGAAGAATCAGGGCTATTCCCGTCAGCAATCAATCATGTTCTCATCAATGAATACCTACCTAACCAAGGCATAATGCCACACCAGGATGGGCCTGCCTATTTTCCCGTAGCAGCAATTCTTTCACTTGGATCTCCTGTTGTCATGGACTTCACTCCCCATTCCAGATTGAAACTGGATGCCCATGATATTATTGATGAAAATGGCGAAACTTTAGATATTGGGAAAGATGAGTGGCTTGATGGTCACCACCCATTTTCTGTCTTATTAATGCCGGGCAGTCTACTAATATTCAAGGATAAAGCATACTCAGATTACTTGCACGGTATAAAAGACACTGCAGTACATTGCTATGATGGGGCTGTGAATGAAACAGAAGCTTTGAAACACAAGGAATTAGACCAACCCCACTTAAGCTCCGAGAAAGCAGTGGAGACAATGGGAACAGACGAATATAAGAATATACAAAGGACATCCAGTAGAATTTCATTGACTTGTCGGTTGGTACCAAAAGTTCACAAAAATTTGTTTAGGTCTCCCCAACTCAGCGCCCAGTTTCACTGTTTCAGTTGGTTGGCCTCATCTCTTCCCCTCCCTATTTCTTCTTTCGCCGGTCCTCGATTACAGTTCATTTTTGCATTTTCAAATTCAGCGCTTGATTTCGGATTTGTTTCACTTCACAGTTCAGACACCCTCTTCATACTATCCTCGTTGCAGGAAAATTATGCTTTTGAAGGGATGAAGAAAGTCGCCTGTGTGGATATTGAGAAGCCTGAGCAGATTCACATCGGGGTTGTATTTGATAAGTTGGTCAAGGAGCTTGGGGAACCTGTAGACTTTGAACTTCCAGATTGGTTTAATAAGTGGAAGCCAATGCCATACACCTTCATAAAACGCAATATATATCTCACGAAGAAGGTCAAGAAACGACTTGACGATGATGGCATTTTCTGTTCCTGTACTCCTTCACCTGGATCTTCTAGTGTATGTGGTAAAGACTGCCACTGTGGGATGCTACTCTCTAGCTGCTCTTCAGGCTGTAAATGTGGGAGTTCCTGTCTCAACAAACCATTCCAGAATCGACCTGTGAAAAAGATGAAATTGATCAAGACAGAGAAATGTGGTTCTGGAATTGTGGCAGATGAAGATATCGAGCAAGGCGAGTTTGTCATAGAATATGTAGGAGAAGTCATTGATGACAAAACATGTGAAGAAAGGCTTTGGAATATGAAACATCGGGGGGAGACAAACTTTTACTTATGTGAAATCAATCGAGATATGGTGATTGATGCAACATATAAGGGAAACAAATCTAGATATATAAATCATAGTTGCTGCCCCAATACTGAGATGCAAAAATGGATAATTGATGGCGAAACAAGAATTGGCATATTTGCAACTCGCGACATAAGAAAGGGCGAGCATCTAACATATGATTACCAGTTTGTTCAGTTTGGTGCAGATCAAGACTGTCATTGTGGTGCTGTTAGGTGTAGGCGTAAGTTAGGGGTTCGACCAACCAAGCCTAAATTGTCTTCTGATGCTGCATTAAAATTAGTTTATCAGAATGGAGGTTTACATATAGGAAGTTCTCGTGTTGTCGACCAACCAAAGTGCTCACGCAATTGCATTGGTGAAGTTGTTAGGATAAAACACCCTGTGAATGAGAGGTTTGGGATTATTAGACGGTTTGATAAATATTCTAAAAAACACTCGATCATGTTTGAGGATGGTGCTGTTCATTTTATTGACATGTCAAAAGAAGACTGGGAATTTGTGAGATTGTGA 2064 0.406 MKSRKLSKGRVMEGNEKLSCYKVGSLPTLFYIPNFFTDSEQTFLLNNIYGASPSKWKSLKNRRLQNWGGVVHEKGLLPQVLPPWLTNLTHKIYEESGLFPSAINHVLINEYLPNQGIMPHQDGPAYFPVAAILSLGSPVVMDFTPHSRLKLDAHDIIDENGETLDIGKDEWLDGHHPFSVLLMPGSLLIFKDKAYSDYLHGIKDTAVHCYDGAVNETEALKHKELDQPHLSSEKAVETMGTDEYKNIQRTSSRISLTCRLVPKVHKNLFRSPQLSAQFHCFSWLASSLPLPISSFAGPRLQFIFAFSNSALDFGFVSLHSSDTLFILSSLQENYAFEGMKKVACVDIEKPEQIHIGVVFDKLVKELGEPVDFELPDWFNKWKPMPYTFIKRNIYLTKKVKKRLDDDGIFCSCTPSPGSSSVCGKDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLIKTEKCGSGIVADEDIEQGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGAVRCRRKLGVRPTKPKLSSDAALKLVYQNGGLHIGSSRVVDQPKCSRNCIGEVVRIKHPVNERFGIIRRFDKYSKKHSIMFEDGAVHFIDMSKEDWEFVRL 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1742 687 Gene3D SET domain 376 610 IPR046341 -
Glsi01g1742 687 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 102 262 IPR005123 -
Glsi01g1742 687 Pfam SET domain 467 572 IPR001214 GO:0005515
Glsi01g1742 687 SMART shorttest3 405 455 IPR006560 GO:0005634|GO:0042054
Glsi01g1742 687 SMART PostSET_3 579 595 IPR003616 -
Glsi01g1742 687 SMART set_7 456 579 IPR001214 GO:0005515
Glsi01g1742 687 FunFam Histone-lysine N-methyltransferase 372 611 - -
Glsi01g1742 687 Pfam 2OG-Fe(II) oxygenase superfamily 66 259 IPR027450 -
Glsi01g1742 687 SUPERFAMILY SET domain 367 585 IPR046341 -
Glsi01g1742 687 ProSiteProfiles SET domain profile. 456 573 IPR001214 GO:0005515
Glsi01g1742 687 ProSiteProfiles AWS domain profile. 405 454 IPR006560 GO:0005634|GO:0042054
Glsi01g1742 687 SUPERFAMILY Clavaminate synthase-like 27 262 - -
Glsi01g1742 687 Gene3D - 21 267 IPR037151 -
Glsi01g1742 687 PANTHER SET DOMAIN PROTEINS 371 610 - -
Glsi01g1742 687 ProSiteProfiles Post-SET domain profile. 579 595 IPR003616 -
Glsi01g1742 687 CDD SET_ASHR3-like 457 595 - -
Glsi01g1742 687 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 379 632 IPR025787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1742 Glsi-ChrGlsi01 79878359 79893932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1742 429 591 C2H2 Transcription Factor Family AT2G23740 34.973 6.91e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi01g1742 2OG-FeII_Oxy_2 9.3e-12 CL0029