Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1685 ATGGAGGAAAAAGAGAGTTTTGGTCCTGGTCTTGCGGTGAAAGGTGACCAAGTCCCGGAGAGCTACCACGTAGCTTCGAGAAATGAAAACTCTATACAGTTTGGTCTGCCCGAAGCGTTGGCTCCGGCGCCGGTAAGTGTGGCGGCGACTCCAGATGCAAAAGTTAAGAAGAAGAGGGGGAGGCCTAGGAAATATGCGCCTGACGGCACGCTAGCGTTGGCGTTGTCTCCGATGCCCATTTCATCATCAATTCCGTTGACCGGTGATTTCTCCGGTTGGAAACGGGGTAGAGGGCGGCCTATGGAATCGATCAAGAAGTCTTATAAATATGAATTCGAAAGTTCAGGACCAGGTAATGGAATTGCATATTCAGTTGGTGCCAATTTCACACCCCATGTGCTCACAGTTAATGCTGGAGAGGATGTTACTATGAAGGTAATGTCCTCTCAACAAGGATCCCGTGCTATTTGCATTCTTTCTGCAAATGGCACGATTTCAAATGTGACTCTTCGTCAACCAACTTCCTCTGGAGGTACTTTAACATATGAGGGACGGTTTGAGATTCTTTCCTTGTCTGGTTCTTATATGCCAACTGAGAGCGGACTAACAAGGAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCCGGTCCAGATGGTCGAGTGGTGGGGGGTGGACTTGCTGGTCTGTTGGTTGCTGCAGGCCCTGTGCAGGTTGTGGTGGGGAGTTTCCTTCCAGGTCACCAGCAGGAGCAGAAACCGAAGAAGCAGAAGGTGGAGCATTATATATCAACTATTACCCCTGCCCATTTTAATCCTATCTCTGATGAAATAAAAGTCAGTTTTGGAGGATTAAAGCCTATTATGACACCTGCTGCTCTTCACGGAGACAACGTTGATTCTTTGAACAATGCTGAGGGCTCTAGGGACTCATCTAGTGATGATCAAACACCTTTGCCTGAAAAAGAGTCTAACCCCTGCCAATCAGATGCTGGAGTTCCCTGA 1002 0.483 MEEKESFGPGLAVKGDQVPESYHVASRNENSIQFGLPEALAPAPVSVAATPDAKVKKKRGRPRKYAPDGTLALALSPMPISSSIPLTGDFSGWKRGRGRPMESIKKSYKYEFESSGPGNGIAYSVGANFTPHVLTVNAGEDVTMKVMSSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPTESGLTRSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKQKVEHYISTITPAHFNPISDEIKVSFGGLKPIMTPAALHGDNVDSLNNAEGSRDSSSDDQTPLPEKESNPCQSDAGVP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1685 333 ProSiteProfiles PPC domain profile profile. 126 268 IPR005175 -
Glsi01g1685 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 243 IPR005175 -
Glsi01g1685 333 CDD DUF296 130 243 IPR005175 -
Glsi01g1685 333 MobiDBLite consensus disorder prediction 300 323 - -
Glsi01g1685 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 303 IPR039605 GO:0003680
Glsi01g1685 333 MobiDBLite consensus disorder prediction 295 333 - -
Glsi01g1685 333 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Glsi01g1685 333 Gene3D - 131 262 - -
Glsi01g1685 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 250 - -
Glsi01g1685 333 SMART AT_hook_2 56 68 IPR017956 GO:0003677
Glsi01g1685 333 SMART AT_hook_2 94 106 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1685 Glsi-ChrGlsi01 77950245 77954601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1685 50 291 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 61.508 5.48e-93 281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g1685 01 77950245 77954601 Glsi12g1315 12 30660086 30665847 CCT
Glsi01g1685 01 77950245 77954601 Glsi12g1315 12 30660086 30665847 ECH
Glsi01g1685 01 77950245 77954601 Glsi01g1685 01 77950245 77954601 ECH