Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1677 ATGAGGTTAATCTCTTGTCTTGTGTTGCTTGACTATCATTATCTGCTTTTGCATTACCAGTTTAAGATGTCAGAACCTGGTTTCAAAGTTGCCGTGGATATTGGATTAAATCCTTACTTTTCTGAATTTCTTCCTAACTCTATTAGCAAGACTACTTACCCAGATCAGCTCTTTCTCTCTCTTCATAACCCTTCCTCCAGTGTCTTCCTTACAGTTCACGCCAAACGCCTGCTCACTCACTCTCTCTCTCTAATGCTCTGCAAACCAAAGCCAAGGCCAAGCTCTGCACTAACTTCTTATTCACACACTATCACTGCCTTCTTATTTTCTGCTGCGTGGTGGTTCACAATGGAAGATGTGGTTTTGCTGTTCTATATGGGCAAGCAGAAAAGGGAGCATCTTTTCGTTGTTAGGGTAATGGCGGTATTTTTGCTTCTCTCTCCATTTGCCTCGTCTCTCCGTGAAGAAGGACAAGCATTAATGACGATTAAGGCTTACTTCAGCAACGTGGCAGATGTTTTGCTTGATTGGGATGACTTGCACAACGATGACTGCTGTTCTTGGCGTGGAGTCTACTGTGATAATGTCAGCCTTACTGTTCTTACTCTGAATCTGTCGAGTTTGAACCTGGGTGGGGAGATATCACCAGCCATTGGCGATTTAAGAAACTTGCAATCCATAGACCTGCAGGGAAATAAACTAACTGGTCAAATCCCAGATGAAATTGGGAACTGTGCTGCCCTCGTTCATCTGGATTTGTCTGATAATCAACTATATGGTGACATACCCTTCTCCATATCAAAGCTAAAGCAACTTGAGTTTTTGAATTTAAAGAATAATCAGTTGATTGGTCCTATCCCTTCAACCTTAACCCAAATTCCAAACCTGAAGACTCTCGATCTTGCTCGAAATCGGCTCACTGGTGAAATACCAAGACTCCTCTATTGGAATGAAGTCTTGCAATACCTAGGGTTGAGAGGGAACTTGTTGAGTGGAACTCTATCCCCTGATATCTGTCAATTAACCGGTCTGTGGTATTTTGATGTGAGAGGCAACAATTTGACGGGTCCTATACCTGACAGCATTGGGAATTGTACAAGTTTCCAAATTTTGTCACTTCAAGGGAATAGACTAACTGGGAAGATTCCAGAAGTGATAGGATTAATGCAAGCCCTTGCTATTTTGGATTTGAGTGAGAATGAACTGGTGGGACCCATCCCTCCAGTTCTTGGCAATTTGTCCTTTACAGGCAAGCTGTACCTCCATGGAAACATGCTTACCGGTCCAATACCTCCAGAACTCGGCAATATGTCTAGACTAAGCTACCTGCAATTGAATGGCAATCAACTTCTTGGCAGAATTCCTAATGAACTTGGGAAACTTGAACATTTGTTTGAATTTAATGTCCATGGTAATCACTTGAGCGGTTCCATTCCTTTGAGCTTCCGCAGCCTTGGGAGTTTGACTTACTTAAATATCTCTGCAAACAACTTTGAAGGGAGTATACCTATTGAGTTGGGGCATATAATAAATCTTGATACACTGGATCTATCTCGCAATAATTTTTCAGGGCCAGTTCCAGCATCTGTTGGTAATCTAGAACATCTTCTGACCCTTGATATGTCTTTCAACAAGCTGTCGGGTAGCATACCTCCTGAAATTGGTCAGCTGCAGAACCTTGTTTCACTGATTCTGAACAATAATGGCTTGCATGGGAAAATTCCGGATCAGTTAACCAATTGCTTCAGTCTTTCCTCCCTGAATGTATCATACAATAACTTATCTGGATTGATTCCTCTGATGAGGAACTTCTCACGGTTTTCATCCGACAGCTTCATCGGAAATCCTTTATTATGTGGAAATTGGTTAGGGTCAATATGTGGTCCTTACATACCAAAATCCAGGGGTTCCCCTAAACTTGTCATTCTTCATATGGATATGGCCATCCACACCTTTGATGATATAATGAGAAGTACGGAGAATCTAAGTGAGAAATATATAGTAGGTTATGGTGCCTCTAGCACAGTATACAAGTGTATTTTGAAGACTTCTCGACCAATTGCTATTAAGAGACTATACAACCAGCATCCACATAACTTACGGGAGTTTGAGACAGAACTTGAAACTATTGGCAGCATCAGACATAGAAACCTTGTCACCTTGCATGGTTATGCACTAACTCCCAATGGAAATCTCCTTTTCTATGACTATATGGTGAATGGCTCTCTGTGGGATCTTCTTCATGGTCCCTTGAAGAAGATATTGTCCAAGGCAGATAACAACACTGTAATGGAGGCTGTGGATCCTGAGGTGTCTGTTACCTGTATGGATCAGGGCCATGTTAAGAAAACCTTTCAGCTTGCTCTGCTTTGCACAAAAAAGAAACCTTCTGAGAGGCCTACCATGCATGAGGTTGCCAAGGTTTTGGTGTCACTTCTCCCTCCACCTCCCAGTAAAAGTTTTGCCTCATCTGCCAAGACAGTTAACTATGCACAATTTGTGATAGAAAAGGGACAACATCACCCAAAAATGGAGCGGCTAGAACCTCAGCAGCAGAACAATTCTTGTGATGCTCAATGGTTTATTCGCTTTGGGGATACTATATCCAAGAACACCCTCTAA 2622 0.4207 MRLISCLVLLDYHYLLLHYQFKMSEPGFKVAVDIGLNPYFSEFLPNSISKTTYPDQLFLSLHNPSSSVFLTVHAKRLLTHSLSLMLCKPKPRPSSALTSYSHTITAFLFSAAWWFTMEDVVLLFYMGKQKREHLFVVRVMAVFLLLSPFASSLREEGQALMTIKAYFSNVADVLLDWDDLHNDDCCSWRGVYCDNVSLTVLTLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLTGQIPDEIGNCAALVHLDLSDNQLYGDIPFSISKLKQLEFLNLKNNQLIGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNLLSGTLSPDICQLTGLWYFDVRGNNLTGPIPDSIGNCTSFQILSLQGNRLTGKIPEVIGLMQALAILDLSENELVGPIPPVLGNLSFTGKLYLHGNMLTGPIPPELGNMSRLSYLQLNGNQLLGRIPNELGKLEHLFEFNVHGNHLSGSIPLSFRSLGSLTYLNISANNFEGSIPIELGHIINLDTLDLSRNNFSGPVPASVGNLEHLLTLDMSFNKLSGSIPPEIGQLQNLVSLILNNNGLHGKIPDQLTNCFSLSSLNVSYNNLSGLIPLMRNFSRFSSDSFIGNPLLCGNWLGSICGPYIPKSRGSPKLVILHMDMAIHTFDDIMRSTENLSEKYIVGYGASSTVYKCILKTSRPIAIKRLYNQHPHNLREFETELETIGSIRHRNLVTLHGYALTPNGNLLFYDYMVNGSLWDLLHGPLKKILSKADNNTVMEAVDPEVSVTCMDQGHVKKTFQLALLCTKKKPSERPTMHEVAKVLVSLLPPPPSKSFASSAKTVNYAQFVIEKGQHHPKMERLEPQQQNNSCDAQWFIRFGDTISKNTL 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1677 873 Gene3D Phosphorylase Kinase; domain 1 633 732 - -
Glsi01g1677 873 Pfam Leucine rich repeat N-terminal domain 155 194 IPR013210 -
Glsi01g1677 873 PANTHER LEUCINE RICH REPEAT KINASE 2 201 750 - -
Glsi01g1677 873 Gene3D Ribonuclease Inhibitor 153 318 IPR032675 -
Glsi01g1677 873 SUPERFAMILY L domain-like 155 428 - -
Glsi01g1677 873 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 318 390 - -
Glsi01g1677 873 Gene3D Transferase(Phosphotransferase) domain 1 733 820 - -
Glsi01g1677 873 Pfam Leucine Rich repeat 294 309 IPR001611 GO:0005515
Glsi01g1677 873 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 153 317 - -
Glsi01g1677 873 FunFam Leucine-rich repeat receptor protein kinase EMS1 417 503 - -
Glsi01g1677 873 Pfam Protein kinase domain 665 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1677 873 SMART tyrkin_6 662 809 IPR020635 GO:0004713|GO:0006468
Glsi01g1677 873 ProSiteProfiles Protein kinase domain profile. 662 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1677 873 ProSiteProfiles Leucine-rich repeat profile. 295 317 IPR001611 GO:0005515
Glsi01g1677 873 SUPERFAMILY Protein kinase-like (PK-like) 640 753 IPR011009 -
Glsi01g1677 873 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
Glsi01g1677 873 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 504 627 - -
Glsi01g1677 873 Pfam Leucine rich repeat 222 282 IPR001611 GO:0005515
Glsi01g1677 873 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 633 737 - -
Glsi01g1677 873 Gene3D Ribonuclease Inhibitor 319 629 IPR032675 -
Glsi01g1677 873 SMART LRR_typ_2 293 317 IPR003591 -
Glsi01g1677 873 SMART LRR_typ_2 437 461 IPR003591 -
Glsi01g1677 873 SMART LRR_typ_2 341 365 IPR003591 -
Glsi01g1677 873 SMART LRR_typ_2 485 509 IPR003591 -
Glsi01g1677 873 SMART LRR_typ_2 389 413 IPR003591 -
Glsi01g1677 873 SMART LRR_typ_2 533 556 IPR003591 -
Glsi01g1677 873 SMART LRR_typ_2 221 245 IPR003591 -
Glsi01g1677 873 SMART LRR_typ_2 557 581 IPR003591 -
Glsi01g1677 873 SUPERFAMILY L domain-like 392 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1677 Glsi-ChrGlsi01 77843987 77856752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1677 754 873 Receptor kinase-like Gene Family AT5G62230 51.240 2.83e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Glsi01g1677 Pkinase 1e-10 CL0016