Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1668 ATGCCTTCTCTATCTGTCTCTCAGAGCCCCAAAGAGAAGAAGGATAAGAAGGAGAAGAAGAAGATGAAGAAGCACGAGTCTCTAACTGGAGATTCAGAACCCGAAGCATCAATTGGCAAGAAGAGCAAGAAAAGTTCCAAGATTTCAAGCAGTGTGAAGGCGTCTGATTCTGACCAAGATGGGTTTTCGGACAAGAAGGCGAAGAAAAAGGAGAGCAAGAAGCGTAAATCTTTGGATGTTGATGTGGGAGAAGAGAAGAGTGAGACTAGCTCGGAGTTAGTTGAGCCTGAAAGTTCGAAAGCGAAGAGTGAGGAGAAGAGGAAGAATAAAAGGCCGAAATTCGAGGAACCTGACATGGGAGAGGAAAAGGTCGAGAAGAAGGAGGATCACAATGCCATTTCGAACTTTAGGATATCGGGGCCGTTGAGGGCGAAGTTGAAGGGGAAGGGCATTGAATCGCTATTTCCCATTCAGGCCATGACTTTTGATACCATTCTCGATGGGTCTGATTTGGTTGGTCGGGCTCGCACCGGCCAGGGTAAAACTTTGGCTTTTGTGTTGCCCATATTAGAGTCTTTAACAAATGGTCCAGCAAAAGCATCAAGAAAGACTGGCTATGGGAGGTCTCCAAGCGTTCTTGTGCTCTTACCTACTAGGGAATTGGCCTCTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCACTGGGTTTGACTTCTTGTTGTTTATATGGTGGAGCTCCATATCAAGCTCAAGAAATCAAGCTCAAGAGAGGTGTTGATATTGTCGTAGGAACACCAGGCCGCATAAAGGATCATATAGAGAGGGAAAATATTGACCTGACCCAACTAAGGTTCCGTGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTAGAACTCATTTTGGGCAAGGTAGAAGATCTTAGTAAAGTACAGACGCTTCTTTTCAGTGCCACTTTGCCAGACTGGGTTAAGCATATTTCTGCAAAGTTTCTGAAATCAGATAAGAAAACTGCTGACCTCGTCAGGAACGAGAAAATGAAGGCTAGCACCAATGTCAGGCATATAGTTCTTCCATGTACTAGTTCTGCCAGGTCTCAGCTTATCCCAGACATTATTTGCTGCTATAGCAGTGGAGGCCGGACAATTATTTTCACTGAGACAAAGGAGTCTGCTTCTGAGCTTGCAGGTTTATTGCCTGGAGCCCGAGCTCTCCATGGCGACATACAACAAGGACAACGTGAGGTTACATTGTCTGGTTTTAGGTCCGGAAAGTTCATGACGTTAGTGGCCACAAATGTGGCAGCTCGAGGATTAGATATTAATGATGTTCAGTTAATTATCCAGTGTGAACCTCCGCATGATGTAGAAGCCTATATCCATCGTTCTGGCCGCACAGGACGAGCAGGTAATACTGGAGTTGCGGTTATGCTTTATGATCCAAGAAGGTCAAATATATCTAAAATAGAAAGAGAATCTGGTGTGAAATTTGAACACATATCAGCTCCCCAGCCCGCTGATATTGCCAAAGCTGTTGGTGGGGATGCTGCTGAAATGATAACCCAAGTGTCCAATAGTGTGATTCCTGCATTCAAGCCTGCTGCTGAGGAGCTTTTGAACAACTCTGGTTTATCAGCTGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCTATTGGTTTTACTGAGATAAAGAAAAGATCACTTCTTACTTCCATGGAGAACTATGTAACGTTACTTCTTGAGATTGGAAGACCCATCTTCACCCCATCTTATGCATATGGAGTCCTGAGGAGATTCTTGCCTGAGGAGAAAGTTGAGTCAGTGAAGGGTCTTACTCTAACCGCAGATGGAAATGGTTGTGTTTTTGATGTACCAGCTGAAGATTTAGATACATTTCTTACTGGTCAGGAAAATGTTGCTAATGTAAGCTTAGAAGTATTAGAAACATTGCCACGTCTGCAAGAAAGAGACCAATCACGAGGGGGCAGATTCGGTGGTGGTGGTGGTCGCGGTGGGTTTGGCAATAGAAGTGGGAGTGGTGGGAACAGGTTTTCTGGTGGAAGAGGTGGCAGGAATTGTGGTTTTTCAAATCAAAAGAGTGATAGGTTTTCCGGTGGTTCTAATGGCGGGAGAGGTCGCGGCAACAGATGGGGAAAGAGATGGTAA 2184 0.4496 MPSLSVSQSPKEKKDKKEKKKMKKHESLTGDSEPEASIGKKSKKSSKISSSVKASDSDQDGFSDKKAKKKESKKRKSLDVDVGEEKSETSSELVEPESSKAKSEEKRKNKRPKFEEPDMGEEKVEKKEDHNAISNFRISGPLRAKLKGKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKASRKTGYGRSPSVLVLLPTRELASQVHADFEVYGGALGLTSCCLYGGAPYQAQEIKLKRGVDIVVGTPGRIKDHIERENIDLTQLRFRVLDEADEMLRMGFVEDVELILGKVEDLSKVQTLLFSATLPDWVKHISAKFLKSDKKTADLVRNEKMKASTNVRHIVLPCTSSARSQLIPDIICCYSSGGRTIIFTETKESASELAGLLPGARALHGDIQQGQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPHDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHISAPQPADIAKAVGGDAAEMITQVSNSVIPAFKPAAEELLNNSGLSAVELLAKALAKAIGFTEIKKRSLLTSMENYVTLLLEIGRPIFTPSYAYGVLRRFLPEEKVESVKGLTLTADGNGCVFDVPAEDLDTFLTGQENVANVSLEVLETLPRLQERDQSRGGRFGGGGGRGGFGNRSGSGGNRFSGGRGGRNCGFSNQKSDRFSGGSNGGRGRGNRWGKRW 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1668 727 MobiDBLite consensus disorder prediction 697 711 - -
Glsi01g1668 727 MobiDBLite consensus disorder prediction 661 727 - -
Glsi01g1668 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 488 IPR027417 -
Glsi01g1668 727 CDD DEADc 142 339 - -
Glsi01g1668 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 344 IPR014001 -
Glsi01g1668 727 MobiDBLite consensus disorder prediction 74 128 - -
Glsi01g1668 727 MobiDBLite consensus disorder prediction 1 128 - -
Glsi01g1668 727 Pfam Helicase conserved C-terminal domain 378 476 IPR001650 -
Glsi01g1668 727 CDD SF2_C_DEAD 359 485 - -
Glsi01g1668 727 Gene3D - 77 343 IPR027417 -
Glsi01g1668 727 SMART helicmild6 399 476 IPR001650 -
Glsi01g1668 727 Pfam DEAD/DEAH box helicase 155 332 IPR011545 GO:0003676|GO:0005524
Glsi01g1668 727 CDD GUCT_RH7_like 572 657 - -
Glsi01g1668 727 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 90 548 - -
Glsi01g1668 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 374 515 IPR001650 -
Glsi01g1668 727 SUPERFAMILY RNA-binding domain, RBD 569 652 IPR035979 GO:0003676
Glsi01g1668 727 FunFam DEAD-box ATP-dependent RNA helicase 7 582 654 - -
Glsi01g1668 727 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 288 296 IPR000629 -
Glsi01g1668 727 MobiDBLite consensus disorder prediction 43 57 - -
Glsi01g1668 727 Pfam GUCT (NUC152) domain 565 660 IPR012562 GO:0003723|GO:0004386|GO:0005524
Glsi01g1668 727 Gene3D - 344 504 IPR027417 -
Glsi01g1668 727 SMART ultradead3 150 362 IPR014001 -
Glsi01g1668 727 Gene3D - 579 654 - -
Glsi01g1668 727 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1668 Glsi-ChrGlsi01 77770362 77775914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1668 168 515 Eukaryotic Initiation Factors Gene Family AT1G72730 30.986 9.79e-41 152