Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1662 ATGCCGTCGCGGCAACCCTCCACATCGCCGCCGTCTACGGTTGTTGGTGACCCAAACCCACCTTCTCCAAGCCACCCCCTTTTGCCTCGTTTAATTGCTTCCGCTGCCTCTGCTTGCGCTCTCTTCCTTCTCCCTCTCCTCTGTTCTCGCAGGAATAAACGCACTACTCCTTCTTCTGATTCCGAATCCAAGCCTCCTTATCGTTTCTCTTACTCTCTTCTCCGCCGTGCCACTAACTCCTTCTCTACCAGTATCGGCCAAGGCGGTTTTGGCCGTGTCTTCTCTGGAAATCTGCCTTCGATTCGGAAACCCATCGCCGTCAAGCTCATGGACTCTGCTTCTCTTCAAGGCGAGCGTGAGTTTCACAACGAGCTCTTCTTCGCTTCAAGGCTTCGTTCCACACACGTTGTACCCGCCATAGGATTCTCCTGTGACAGAAAGCGCCGTAGGTTCTTGCTCGTCTATGAATTGATGCAGAATGGGAATCTTCAGGATGCACTATTACACCGGAAGTGCCCTGAGCTGATGGGTTGGAAGAAGCGTTTCGCCATTATCATTGATATAGCTAAAGGAATCCATTACCTTCACTCTTGCGACCCACCTGTAATTCACGGCGATATCAAGCCGAGTAATGTTCTACTCGACGGTTCTTTCTCGGCAAAAATTGGGGATTACGGACTTGCAAGGTTGAAATCGGAAACCCTGTTTGAAGTGGAAATTTTGAGTGGATTGGACCTGGAGCTGGAGAGTAACGTTGGGGTTGGAATTGATGATTGTGGGTCATTGCTTGAGGAAACAGAGAGTATAAATTCTGTTTTTGAGACAACACCGGATACAGGTTTGGCTGCAGCGGCATTGCCGTCGGAGGTAAATTTTGACAAGGCTAAGAAAAATAATAAAGGGTTAAAGAGCCATTCAGTGAAGGATTGGTGGTGGAAGCAAGATAATGAGGCTGAAAATAAAAAAGTGAAAGATCATGTGATGGAGTGGAATGGAAAGCAGAGACCAGAATCAAGTAGCCAAGCTACAGTGGGTAAGCCAGATAAAAAGAAGAGCCGGAAGCCATTGGAATGGTGGGTATCAATGGATGAAGAGAAGACAAGGCCAGCAAGGGAATGGTGGAAAGAGGAGGACAGTGAAGAGCTTGCAAAGAAGAAAAAAAAGAAGAAAAAGCAGCAGAAAAAGGGAATAAAAAGTGATGAAAATAGTGATGAGGATGATTTTTATGGCGAGAGAAAGAAGAGAAAAAGCCAGAGTAGGAAGAGTTACGGTACTATAGATTGGTGGTTTGATGGGTTTAGCAGGAATAGTCATGATTCTGCTTCCGCAAGCGGAGAAATTCCCAAGAGTGGAGGAATCAGTAGTACTCCAAGTATGAGGGGAGCGGTGTGTTATGTTGCTCCCGAGTATAGTTATGGCGGAGAAGTAACAGAGAAGTGCGATGTGTATGGTTTTGGGGTTCTATTGCTTGTCATAATTTCTGGGAGACGCCCACTTCAAGTCAGTACCGGTTCGCCATTGTCAGAGCTCCAGCGAGCAAACCTTGTGTCGAGGGCACGCCATTGTGCGCGCCATGGGAAGTTGCTTGAACTGGTGGATCAGTCTGTGAAGTCATTGGACAAAGAGCAGGCTCTTCTCTGTATCAAGGTTGCTCTGCTCTGTTTGATCAAGTCACCTTCTCGTCGTCCTTCGATGGAAGAGGTAGTAGGAATGCTCTCTGGGACGTCGGAGCCACCCCAATTGCCCCTTGAGTATTCATCGTCACCCCCATCTCGCTTCCCTTTCAAGTCTCATGGAAAGGGCCATTGTTCTAGCTAA 1818 0.4774 MPSRQPSTSPPSTVVGDPNPPSPSHPLLPRLIASAASACALFLLPLLCSRRNKRTTPSSDSESKPPYRFSYSLLRRATNSFSTSIGQGGFGRVFSGNLPSIRKPIAVKLMDSASLQGEREFHNELFFASRLRSTHVVPAIGFSCDRKRRRFLLVYELMQNGNLQDALLHRKCPELMGWKKRFAIIIDIAKGIHYLHSCDPPVIHGDIKPSNVLLDGSFSAKIGDYGLARLKSETLFEVEILSGLDLELESNVGVGIDDCGSLLEETESINSVFETTPDTGLAAAALPSEVNFDKAKKNNKGLKSHSVKDWWWKQDNEAENKKVKDHVMEWNGKQRPESSSQATVGKPDKKKSRKPLEWWVSMDEEKTRPAREWWKEEDSEELAKKKKKKKKQQKKGIKSDENSDEDDFYGERKKRKSQSRKSYGTIDWWFDGFSRNSHDSASASGEIPKSGGISSTPSMRGAVCYVAPEYSYGGEVTEKCDVYGFGVLLLVIISGRRPLQVSTGSPLSELQRANLVSRARHCARHGKLLELVDQSVKSLDKEQALLCIKVALLCLIKSPSRRPSMEEVVGMLSGTSEPPQLPLEYSSSPPSRFPFKSHGKGHCSS 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1662 605 SMART serkin_6 79 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1662 605 MobiDBLite consensus disorder prediction 395 414 - -
Glsi01g1662 605 Coils Coil 375 395 - -
Glsi01g1662 605 MobiDBLite consensus disorder prediction 369 416 - -
Glsi01g1662 605 MobiDBLite consensus disorder prediction 330 355 - -
Glsi01g1662 605 MobiDBLite consensus disorder prediction 1 28 - -
Glsi01g1662 605 MobiDBLite consensus disorder prediction 572 605 - -
Glsi01g1662 605 Pfam Protein tyrosine and serine/threonine kinase 81 231 IPR001245 GO:0004672|GO:0006468
Glsi01g1662 605 ProSitePatterns Protein kinases ATP-binding region signature. 85 108 IPR017441 GO:0005524
Glsi01g1662 605 ProSiteProfiles Protein kinase domain profile. 79 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1662 605 SUPERFAMILY Protein kinase-like (PK-like) 62 591 IPR011009 -
Glsi01g1662 605 MobiDBLite consensus disorder prediction 579 593 - -
Glsi01g1662 605 Gene3D Transferase(Phosphotransferase) domain 1 158 243 - -
Glsi01g1662 605 Gene3D Transferase(Phosphotransferase) domain 1 432 581 - -
Glsi01g1662 605 Gene3D Phosphorylase Kinase; domain 1 67 157 - -
Glsi01g1662 605 MobiDBLite consensus disorder prediction 1 27 - -
Glsi01g1662 605 PANTHER OS07G0586332 PROTEIN 1 600 IPR044576 -
Glsi01g1662 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Glsi01g1662 605 MobiDBLite consensus disorder prediction 369 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1662 Glsi-ChrGlsi01 77726124 77727941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1662 456 579 Receptor kinase-like Gene Family AT2G43700 32.800 4.76e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Glsi01g1662 PK_Tyr_Ser-Thr 2.4e-24 CL0016