Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1661 ATGTTTCCTTTACAACGAAGCAATGAGCTGCTGATCGAGTTTTCTAGCCGTCCCCACCAGCAGCTACACAAGATCTCAGAAGATCTGATTCTGGATGGTCATGCTTCTCTGGATGTCACTAATTATTCTGATAAAAAACTAGGTAGCAGACGGACAAGGAAACTATTTTTTGGGTCTGATAAGGACAACAGCCATGGCAATTCTAATAACGAGTGTAAGCAGAAGAAGAAGAAGATTATTCATAGGGAGATTGAGAGGCAAAGGAGGCAAGAAATGGCTGCCCTTTATACCTCCCTTAGATCTCTTCTCCCTCTTGAGTACATCAAGGGTAAGCGCTCGATGTCTGATCACATGAATGAGGCGGTTAATTACATAAATCAACTGCAGAAAAATATCAAAGACTTGAGTGCCAGGAGAGATGAACTGAAGAGACTCTCAAATTCAAATCCAGAAAACCACGAGAGCAAACAACACACATCTAGATGCAGCTTTAGTGTCCATGAAAATAACGGCGGTGTAGGAATTGAAGTTACCAGTGGATTCAGAGAGGAAAGGCTTCCCCTTCCAAAATTGCTGGAATTAGTGCTTGAAGAAGGACTTGAAATTGTTACTTGTCTTTCCACCCAAGTCGATGGTAGATTACTTCATAGTGTTCAGTGTGAGGTTAATAATTCCGACCGCGTAGATCTAGCAGTTCTGAGAAGGAAAGTTGCCAACGTAGTTCCATCATTTAGATGTTCTGATTAG 747 0.4177 MFPLQRSNELLIEFSSRPHQQLHKISEDLILDGHASLDVTNYSDKKLGSRRTRKLFFGSDKDNSHGNSNNECKQKKKKIIHREIERQRRQEMAALYTSLRSLLPLEYIKGKRSMSDHMNEAVNYINQLQKNIKDLSARRDELKRLSNSNPENHESKQHTSRCSFSVHENNGGVGIEVTSGFREERLPLPKLLELVLEEGLEIVTCLSTQVDGRLLHSVQCEVNNSDRVDLAVLRRKVANVVPSFRCSD 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1661 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 144 IPR036638 GO:0046983
Glsi01g1661 248 SMART finulus 82 134 IPR011598 GO:0046983
Glsi01g1661 248 MobiDBLite consensus disorder prediction 56 78 - -
Glsi01g1661 248 Coils Coil 118 145 - -
Glsi01g1661 248 CDD bHLH_AtORG2_like 77 149 - -
Glsi01g1661 248 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 65 238 - -
Glsi01g1661 248 Gene3D - 67 162 IPR036638 GO:0046983
Glsi01g1661 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 128 IPR011598 GO:0046983
Glsi01g1661 248 Pfam Helix-loop-helix DNA-binding domain 78 129 IPR011598 GO:0046983
Glsi01g1661 248 FunFam Transcription factor bHLH126 68 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1661 Glsi-ChrGlsi01 77719211 77720421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1661 81 238 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 44.578 1.22e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi01g1661 HLH 3.1e-09 No_clan