Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1659 ATGATGAATCCTTTATACACAAATGACCCAATTTATGATGATTCGTTCTTTCAGATTTCTTTTTTGAATCCTCCTGATCTCCCAATCCAAACAATCCCAGAAGATCAGATCTTGCGTGATCCTCTTGAAGTAGGAAAGGGCAAGCGGCAGCAAAAGCAATTTCCAGCTGCTTGGGGAAAAAAGGACTATCAGATTACTAAAGATGATCAAAACAAGAGGGGGATTCATAGGGAGACAGAAAAACAAAGAAGACAAGAAATGGCCACTCTTTGTGCTTCCCTCAGATCACTTCTTCCTCTTGAATATATAAAGGGAAAGAGATCAACTTCCGATCATATGTATGAGGCAGTGAATTATATCAAACACCTAGAGAATAAGGTTATTCTGCGGAGACTGAGTCTGAACCTGAAACATGCTGATATGTTATTATGGAGAGTTTCTAATCTCAGACATTAA 456 0.386 MMNPLYTNDPIYDDSFFQISFLNPPDLPIQTIPEDQILRDPLEVGKGKRQQKQFPAAWGKKDYQITKDDQNKRGIHRETEKQRRQEMATLCASLRSLLPLEYIKGKRSTSDHMYEAVNYIKHLENKVILRRLSLNLKHADMLLWRVSNLRH 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1659 151 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 61 127 - -
Glsi01g1659 151 Gene3D - 62 150 IPR036638 GO:0046983
Glsi01g1659 151 SMART finulus 77 129 IPR011598 GO:0046983
Glsi01g1659 151 CDD bHLH_AtORG2_like 72 127 - -
Glsi01g1659 151 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 123 IPR011598 GO:0046983
Glsi01g1659 151 Pfam Helix-loop-helix DNA-binding domain 72 124 IPR011598 GO:0046983
Glsi01g1659 151 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 133 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1659 Glsi-ChrGlsi01 77683516 77685007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1659 66 127 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 66.129 2.92e-22 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi01g1659 HLH 3.1e-10 No_clan