Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1649 ATGGTGAGGGGAAAAGTTCAAATGAAGAGAATTGAAAATGCAAGTAGCCGTCAAGTGACGTTTTCAAAGCGTCGGAATGGGCTCCTGAAGAAAGCCTACGAGCTATCTGTTCTTTGTGATGCCCAGGTAGCTGTGATGATCTTTTCACAAGGAGGCAGGCTGTCTGAGTTCTCAAGCTCTGACATCAGGAAAATTTTGGAACGATACCGGAAATATGCCCAAGATCATACCAACAAGTTTGACGAGGAACAACATAGCCAGCAACTCAAGTTTGAATCTGCAATCATGGCAAAGGAGATTGAGCTTCTTGAACTCTCTCAAAGGAAACTACTGGGACAAAGTTTGAGTTCTTGTTCATATGATGAACTCAAAGCAATGGAGGAACAGATGGAGGGAAGTTTGCATAATATCAAGCTCAAAAAGGCTCAGCTGTTCAGTGAGAAAATTGAGCAACTAGAAGACAAGTATGGCAAACAAACATTGCAGCAATCGGCTACGCACAAAGAAGCAGCACCCTACAGTCCAATTAGCAAGAATTTGGACGTGGAAACTGAATTATTTATTGGACTCCCAGAAATGCGATGCCCATAA 591 0.4264 MVRGKVQMKRIENASSRQVTFSKRRNGLLKKAYELSVLCDAQVAVMIFSQGGRLSEFSSSDIRKILERYRKYAQDHTNKFDEEQHSQQLKFESAIMAKEIELLELSQRKLLGQSLSSCSYDELKAMEEQMEGSLHNIKLKKAQLFSEKIEQLEDKYGKQTLQQSATHKEAAPYSPISKNLDVETELFIGLPEMRCP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1649 196 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Glsi01g1649 196 Pfam K-box region 82 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi01g1649 196 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi01g1649 196 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Glsi01g1649 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi01g1649 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi01g1649 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi01g1649 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi01g1649 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi01g1649 196 ProSiteProfiles K-box domain profile. 86 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi01g1649 196 CDD MADS_MEF2_like 3 76 IPR033896 GO:0000977|GO:0045944
Glsi01g1649 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 159 - -
Glsi01g1649 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi01g1649 196 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1649 Glsi-ChrGlsi01 77527095 77554959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1649 1 145 MADS-box Gene Family AT5G62165 60.959 2.50e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi01g1649 K-box 1.9e-17 No_clan