Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1637 ATGGATGGAGGTGGGGGCAATAAGCGCGTGTTCCAGCGCCTCGGTGGCCCACCGGCGGATACCAGGAACAGGAAAGTATGTTATCATTGGCAGGCGGGCAAGTGCAATAGGCATCCGTGCCCCTTTCTGCATGGTGAATTACCTCCTCCAAACGCCAACGGGATGCCTTCGAAGCGTTCCCATCGGTTTGCTGATGATTCAGGTTTCTCGGGACCACGGAAGAGTCCGAATTTTAATGGTGCTTCAACGTGGGGGCGGGTTCATGGTGGTGGAGGAGCAGCAGCAGCTGGTAATGATATAGTTAGGAAGAATGATAAAGTTTGTAATTATTGGGTCCAGGGGAGTTGTAATTATGGAGACAGGTGTAGGTTTCTTCACTCTTGGAGTTTAGGTGATGGTTTTTCGTTACTGACACAGCTTGAAGGGCATGAGAAGGTTATTAGTGGAATAGCCCTGCCATCTGGTTCTGATAAGCTTTATACTGGAAGTAAGGATGAAACCGTAAGGGTTTGGGACTGCCAGTCCGGAAAGTGTATAGCTGTGGTCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGATTTTTGTTGGCATAACTAATATTGTCAAGGCCTGGAACACTCAAACTTCGATGGAGCTAAGTCTGAGTGGCCCGGTTGGACAAGTTTATGCACTGGTTGTGGGTAATGATATGCTCTTAGCTGGTACACAGGATGGATCTATATTGGCATGGAAGTTTAATGTAGTTGCCCACTGTTTTGAGCCAGCTGCATCGCTTAAAGGCCATTCACTTTCTGTTGTTTCATTAGTTGTTGGTGCTAATAAGCTTTACTCTGGTTCTATGGATCATACAATAAGAGTCTGGAATCTTGAAACTTTGCAGTGTTTACAGACACTTACAGAGCACACATCTGTTGTGATGTCGGTTCTTTGTTGGGACCAGTTTCTTTTATCTTGTTCATTGGACAAAACAGTAAAGGTGTGGGTTGCTACAGAAAGTGGAAACCTGGAAGTGACATATACTCACAATGAAGAACATGGTGTACTTACCCTTTGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGCTGTGCTCTTGCAATGATAATACTGTGCGCCTCTATGATTTGCCATTATTATCTGACAGAGGAAAGATTTTCACTAAACAAGAGGTTCGAGCAATGCAAATAGGTCCTGGTGGCATATTTTTCACTGGTGATGGAACAGGTGAAGTGAGAGTGTGGAATTGGTCAAAGGGGCCATCTCCCAGCATTCAATAA 1293 0.4532 MDGGGGNKRVFQRLGGPPADTRNRKVCYHWQAGKCNRHPCPFLHGELPPPNANGMPSKRSHRFADDSGFSGPRKSPNFNGASTWGRVHGGGGAAAAGNDIVRKNDKVCNYWVQGSCNYGDRCRFLHSWSLGDGFSLLTQLEGHEKVISGIALPSGSDKLYTGSKDETVRVWDCQSGKCIAVVNLGGEVGCMISEGPWIFVGITNIVKAWNTQTSMELSLSGPVGQVYALVVGNDMLLAGTQDGSILAWKFNVVAHCFEPAASLKGHSLSVVSLVVGANKLYSGSMDHTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWVATESGNLEVTYTHNEEHGVLTLCGMHDSQGKPILLCSCNDNTVRLYDLPLLSDRGKIFTKQEVRAMQIGPGGIFFTGDGTGEVRVWNWSKGPSPSIQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1637 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 302 IPR001680 GO:0005515
Glsi01g1637 430 SUPERFAMILY CCCH zinc finger 103 127 IPR036855 GO:0046872
Glsi01g1637 430 Gene3D - 257 429 IPR015943 GO:0005515
Glsi01g1637 430 FunFam Zinc finger CCCH domain-containing protein 48 220 428 - -
Glsi01g1637 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 296 - -
Glsi01g1637 430 ProSiteProfiles Zinc finger C3H1-type profile. 102 129 IPR000571 GO:0046872
Glsi01g1637 430 Pfam WD domain, G-beta repeat 260 293 IPR001680 GO:0005515
Glsi01g1637 430 Pfam WD domain, G-beta repeat 136 172 IPR001680 GO:0005515
Glsi01g1637 430 Pfam WD domain, G-beta repeat 298 332 IPR001680 GO:0005515
Glsi01g1637 430 PRINTS G protein beta WD-40 repeat signature 159 173 IPR020472 -
Glsi01g1637 430 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Glsi01g1637 430 PRINTS G protein beta WD-40 repeat signature 320 334 IPR020472 -
Glsi01g1637 430 Pfam CCCH-type zinc finger 106 126 IPR041367 -
Glsi01g1637 430 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 181 IPR001680 GO:0005515
Glsi01g1637 430 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 140 172 - -
Glsi01g1637 430 FunFam Zinc finger CCCH domain-containing protein 48 128 218 - -
Glsi01g1637 430 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Glsi01g1637 430 SMART c3hfinal6 22 46 IPR000571 GO:0046872
Glsi01g1637 430 SMART c3hfinal6 104 128 IPR000571 GO:0046872
Glsi01g1637 430 Gene3D - 105 125 - -
Glsi01g1637 430 SMART WD40_4 212 249 IPR001680 GO:0005515
Glsi01g1637 430 SMART WD40_4 337 380 IPR001680 GO:0005515
Glsi01g1637 430 SMART WD40_4 386 420 IPR001680 GO:0005515
Glsi01g1637 430 SMART WD40_4 296 333 IPR001680 GO:0005515
Glsi01g1637 430 SMART WD40_4 256 293 IPR001680 GO:0005515
Glsi01g1637 430 SMART WD40_4 133 172 IPR001680 GO:0005515
Glsi01g1637 430 MobiDBLite consensus disorder prediction 51 72 - -
Glsi01g1637 430 Gene3D - 126 256 IPR015943 GO:0005515
Glsi01g1637 430 PANTHER - 89 425 IPR044715 -
Glsi01g1637 430 ProSitePatterns Trp-Asp (WD) repeats signature. 280 294 IPR019775 -
Glsi01g1637 430 SUPERFAMILY WD40 repeat-like 134 424 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1637 Glsi-ChrGlsi01 77419541 77424501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1637 130 304 Eukaryotic Initiation Factors Gene Family AT2G46290 24.490 1.63e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi01g1637 WD40 0.00031 CL0186