LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi01g1635	ATGGATGTCGACAAGAGCAATAGCAGCACTGAACCTTCAACTTCTTACAGTTGTTACAAAGAAGCAAGTCTAACAGAAACCATACTGGACACAAAGCATATCTCTAATTTGAAAGATCGGTACATTCTTGGTGAGCCCTTGGGTTGGGGACAATTTGGTGTTATTAGAGCATGCACTGACAAGCTGACTGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGATTGGTTACTTTAGATGATCTGCGGAGTGTCAAACTTGAGATTGAGATCATGGCTAGGCTATCTGGGCACCCAAATGTTGTCGATCTCAAGGCAGTTTATGAAGACGAAGATTTTGTTCATCTGGTGATGGAGCTTTGTGCTGGAGGTGAGCTGTTTCACCGGCTAGAAAAGCATGGACGATTTTCTGAATCTGAAGCTAGGGTTCTCTTTAGGCACCTCATGCAGGTGGTTTTGTATTGTCATGAAAATGGGATTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGAGCCTCCTCATCTCCAATCAAATTGGCAGATTTTGGGCTTGCAACCTACATCAAGCCTGGGCAGAGTTTGCATGGGTTAGTTGGGAGTCCATTCTATATAGCCCCTGAGGTACTTGCAGGTTCATATAACCAGGCTGCTGATGTTTGGAGTGCAGGTGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCCTTTTGGGGGAAGACCAAATCACGGATATTTGAAGCTGTTAAGGCTGCTGACCTGAGGTTCCCGTCTGAACCTTGGGATCATGTTTCTGGATCAGCCAAGGATTTGATTAAGGGAATGCTCTGCACAGAACCTTCTCGAAGGCTCACTGCTCAGCAGGTTTTAGATCATTGCTGGATGGAGAGCAGTCAAACAAAGCCTGAACAACTAAATGAACATGACGTCCAAAGTTGTGGAGAATGGGAAGTTGGTGATAGCTCCTTCTCTGAATCCTTTATGACCAGGAATCAAGACATCAGCTTTGGGGCGGGATCTCCTATATGTGATGTTCAATCACCTACATTCACATGCAGATCATCATTTTCTTCTTTTATGGTGGAACCTTCGACTCCTTATTCAGCCTCTGTTGGGTTTTCATTTCGGAGCTCCGGTGGTTCCATTGGTTTGGAATTCTCCTCTCCTGTTCCTTCTATGCCTAGCTTTGCATTTCTCAGCCCCAATTCTGTTGTTGAAAAACGTAGTTGTACATTAGAGTTCTCAACCAACACATCAAATGTAAAGATAATTGCCGAAGAAGCAAGCTTGGGAAAACTACTTCTACTTCCAGATTCTACCCTTTGTTGTGGACCTGATAAAGTAATGAATCGCAAGCCGGTGGAGAATAAAAGGGCAGGTAGTACAAATGGAAATAGGGTTTTGGGAATCCACAGCAAGAGAAACCGTACAATTGGGCTTGGAGAACGCGAGCAACTCGACCTCGTGGTGACTGAAACAGTCATTCGTTGGTCATCGTGCACGCAACTCCCTACATCTCTCAGATCGTCTCTGGTCTGTTAA	1554	0.4434	MDVDKSNSSTEPSTSYSCYKEASLTETILDTKHISNLKDRYILGEPLGWGQFGVIRACTDKLTGEVLACKSIAKDRLVTLDDLRSVKLEIEIMARLSGHPNVVDLKAVYEDEDFVHLVMELCAGGELFHRLEKHGRFSESEARVLFRHLMQVVLYCHENGIVHRDLKPENILLATRASSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGSYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWDHVSGSAKDLIKGMLCTEPSRRLTAQQVLDHCWMESSQTKPEQLNEHDVQSCGEWEVGDSSFSESFMTRNQDISFGAGSPICDVQSPTFTCRSSFSSFMVEPSTPYSASVGFSFRSSGGSIGLEFSSPVPSMPSFAFLSPNSVVEKRSCTLEFSTNTSNVKIIAEEASLGKLLLLPDSTLCCGPDKVMNRKPVENKRAGSTNGNRVLGIHSKRNRTIGLGEREQLDLVVTETVIRWSSCTQLPTSLRSSLVC	517

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi01g1635	517	ProSitePatterns	Protein kinases ATP-binding region signature.	47	74	IPR017441	GO:0005524
	Glsi01g1635	517	PANTHER	SERINE/THREONINE-PROTEIN KINASE	26	312	-	-
	Glsi01g1635	517	Gene3D	Phosphorylase Kinase; domain 1	42	127	-	-
	Glsi01g1635	517	CDD	STKc_CAMK	40	298	-	-
	Glsi01g1635	517	Gene3D	Transferase(Phosphotransferase) domain 1	128	332	-	-
	Glsi01g1635	517	FunFam	Phosphoenolpyruvate carboxylase kinase	128	315	-	-
	Glsi01g1635	517	SUPERFAMILY	Protein kinase-like (PK-like)	38	378	IPR011009	-
	Glsi01g1635	517	Pfam	Protein kinase domain	43	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi01g1635	517	FunFam	Calcium-dependent protein kinase 1	43	126	-	-
	Glsi01g1635	517	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Glsi01g1635	517	ProSiteProfiles	Protein kinase domain profile.	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi01g1635	517	SMART	serkin_6	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi01g1635	Glsi-ChrGlsi01	77411342	77413965	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi01g1635	37	306	EF-hand Containing Proteins	AT3G57530	51.111	5.87e-98	301

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Glsi01g1635		Pkinase	4.8e-71	CL0016