Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1629 ATGGATAGCAACCTTCCCAGTGGAAACGTGCCTCAACAAGAGCAAGACCCACCTCCTCCTATTCTTGTGCCTCCCTCTCAAGATTCTTCTTCCTCCTCATCTGTAGCTACAGTTGCCGAAAATTTATCGCCGACGCCTCTGCAATCTCCAGGTGGGTCGTTGTCTTCGTCCACCAGGAGGCACTCTAGGTACCGGGGAATCCGGTGCCGGAGCGGGAAATGGGTGTCGGAGATACGGGAGCCACGTAAAACCACGCGCATTTGGCTTGGCACCTACCTCACACCGGAGATGGCTGCTGCTGCTTATGATGTGGCTGCTCTGGCATTGAAAGGCCCAAACACGCCCCTCAACTTCCCCACTTCGATTCTCTCGTACCCGATTCCGGCTTCATTGTCCGCCACGAATATCCGGAGAGCCGCGGCTGCTGCTGCTGAGGCGAGGCTATCGAGACCGGCTAACAATAGTACTGGACAAAACCCAGAACGAGGTAGCCGAGCTGAGGATGTTGGTCAGAGCTCAAGTAGTGAACCAATTGCAAGAAGGGAGGAATTTATTGACGAGGATGAGCTATTGAATATGCCGAATTTGCTGGACGATATGGCGAGGGGAATGCAGGTGAGCCCTCCAAGGATGAAGTCCCCGTCTTCGGATGATTCGCCGGGGAATTCAGATGGAGATATCCTTTGGAGTTTTTAA 696 0.5359 MDSNLPSGNVPQQEQDPPPPILVPPSQDSSSSSSVATVAENLSPTPLQSPGGSLSSSTRRHSRYRGIRCRSGKWVSEIREPRKTTRIWLGTYLTPEMAAAAYDVAALALKGPNTPLNFPTSILSYPIPASLSATNIRRAAAAAAEARLSRPANNSTGQNPERGSRAEDVGQSSSSEPIARREEFIDEDELLNMPNLLDDMARGMQVSPPRMKSPSSDDSPGNSDGDILWSF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1629 231 MobiDBLite consensus disorder prediction 145 231 - -
Glsi01g1629 231 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Glsi01g1629 231 MobiDBLite consensus disorder prediction 26 60 - -
Glsi01g1629 231 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Glsi01g1629 231 SMART rav1_2 63 125 IPR001471 GO:0003700|GO:0006355
Glsi01g1629 231 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
Glsi01g1629 231 MobiDBLite consensus disorder prediction 209 231 - -
Glsi01g1629 231 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 26 219 IPR045277 GO:0003700
Glsi01g1629 231 MobiDBLite consensus disorder prediction 1 64 - -
Glsi01g1629 231 MobiDBLite consensus disorder prediction 149 178 - -
Glsi01g1629 231 ProSiteProfiles AP2/ERF domain profile. 63 119 IPR001471 GO:0003700|GO:0006355
Glsi01g1629 231 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1629 Glsi-ChrGlsi01 77352588 77353283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1629 60 231 AP2-EREBP Transcription Factor Family AT5G52020 55.172 1.23e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi01g1629 AP2 1.4e-09 CL0081