Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1626 ATGGATTCCTGTGAGAGACAAGTTGATATCACTGTTTTGGTCGTGGATGATGATACAACTACTCTTTCCATCATCGCAAGTATACTCAGATCATGGGAATACAAAGTTGTCACTGCTATCAACGCCCAAGATGCTTTGAAGACTCTTCGGGAGTTCTCGGGCTTTTTTGACCTCGTTATCACCGATCTTAATATGCCAAGCATGAATGGATTTGAACTGCTAAAGCTTGTTAAAGAAGAATTCCAGCTACCTGTGATCATGATGTCTGCGGATACAAGGAAGAGTGTGATGTCCAAGAGTTTGGCAAAAGGTGCAGCATTTTATATAGTAAAACCAGTATGCCGAGATGACTTCAAAGATATATGGCAGTACGCTGTGGCTGGTAGGAAAGAAAAATTCGTTGCTGAAAATGAGTTGATGGGAAGCGAAGTAGGAGAGTCATCGGGTGAGAAGATCACTTCCCTTCAGGACGTGAATTCTGCCGCACCATCTCCAGTGGCTGAACCTAAGCGAAGAGGAAGGTATGGAAAGAGAAAAGGTGGTCAATTGAACAAGGAAGACCTTAGCGAAGGAAGCTCTGGGGCTCCAAAGAAGCCCAAGGTTGTTTGGACAAATTCCCTTCACAATCAGTTCTTGCTGGCCATAAGACAAATTGGATTGAACAAGGCTGTTCCAAAGAGGATTCTTGAGATCATGAATGTGCCAGGTTTGACAAGAGAAAACGTTGCCAGTCATTTGCAGAAGTATCGCATTTTTCTGAGGAAAGTTGCAGAGAGAGGAATCCTAGAGGGCCTAACTGACAGAGCCTTGAGGTCAAGCTTTGCTTCTGGCCTTCCCACATCTCTCATCAAAGACATCCAAAGGAGAATCCTCAATATGCGTCTCCCTCTCCAGCACCAGCCCCAGCCCCATTTGAGAACACCACCACAATATTCTTCCACCCTACCTCAGCCTTCAACCCCTCTCAATGATTTGCCTCAATTCCCAAGTCTGCATTGCCCCAATCCTTCAAACACAAACCATGTTCCTCAAAATCATCACCAAGCTTTCAACACCAACTCCTTGAACCAAGTCAGACTTGGGAGCAATTTCCATCACCCAGTTTCAACCAAGGCTGTCTTTCCAGCTTATGGAAGTGGGGGAAATGGTTTCATGACTTCTGCGAATGGCCTAACCGGTGGGATAACGATGAACTATGGTGGTGCCTCAATGCATAATAACAACAACTATGGCTCATTGGGAAATTCCAGCAGCTTTAACTATAGTGGTAGTCCAGGCAATAGTGGGAACCAGCTGGTACCTTTTGGCAGAAGTAACTACTATGGAATTCAGCTGAATGGTGGATCTCTTATGGCTGGGATGGATCAGCGTAGGCTTAACAGCGATAATAGCTTTGGCTTAATCAATGGGACTACTCCAAATGCAGTGAGCAATGGCAATTATGGCTTGAGTCAAGGATGGGATGCTTCTGCTGCTGCTGGTAATGTGCTCCCATCAACATTGAACATGTCTAAATCAACTCTAGAAAACGTTTCAGGTCTTCTACCATTGCCTCAGCAATTAAATGATAATCTTGGGAATGCTGGAGATCATGGGCATGATCAGAATAATGTGAATCCAGTGAGTACTGAGGATGAGGCTTGCCAGTTTGATGAGAACCTCACTGAGCTTTTCCTGATGCTAGACGACATGCACCTTCTTAAAGAGAGAGAAGACAACCCTAATGATGTCAGTGAATTTTGGAATTCTGACTTTCCTAACTCTTTCCATGCTGAACAGCTCCTTGAGCAGCTCCTGGGCAATGATGGATTTGCAGACTTGGATTCCTTTGACATGTACCTAGTGGACAAAGCTAATTCTTCAGCAAGCATCTCACAAGCTGCTGTGCAGGCGAGTCATCTTGCTAAACTTCTATAA 1917 0.4465 MDSCERQVDITVLVVDDDTTTLSIIASILRSWEYKVVTAINAQDALKTLREFSGFFDLVITDLNMPSMNGFELLKLVKEEFQLPVIMMSADTRKSVMSKSLAKGAAFYIVKPVCRDDFKDIWQYAVAGRKEKFVAENELMGSEVGESSGEKITSLQDVNSAAPSPVAEPKRRGRYGKRKGGQLNKEDLSEGSSGAPKKPKVVWTNSLHNQFLLAIRQIGLNKAVPKRILEIMNVPGLTRENVASHLQKYRIFLRKVAERGILEGLTDRALRSSFASGLPTSLIKDIQRRILNMRLPLQHQPQPHLRTPPQYSSTLPQPSTPLNDLPQFPSLHCPNPSNTNHVPQNHHQAFNTNSLNQVRLGSNFHHPVSTKAVFPAYGSGGNGFMTSANGLTGGITMNYGGASMHNNNNYGSLGNSSSFNYSGSPGNSGNQLVPFGRSNYYGIQLNGGSLMAGMDQRRLNSDNSFGLINGTTPNAVSNGNYGLSQGWDASAAAGNVLPSTLNMSKSTLENVSGLLPLPQQLNDNLGNAGDHGHDQNNVNPVSTEDEACQFDENLTELFLMLDDMHLLKEREDNPNDVSEFWNSDFPNSFHAEQLLEQLLGNDGFADLDSFDMYLVDKANSSASISQAAVQASHLAKLL 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1626 638 Gene3D - 195 257 - -
Glsi01g1626 638 MobiDBLite consensus disorder prediction 304 321 - -
Glsi01g1626 638 CDD REC_typeB_ARR-like 12 126 - -
Glsi01g1626 638 SUPERFAMILY CheY-like 10 128 IPR011006 -
Glsi01g1626 638 Gene3D - 10 171 - -
Glsi01g1626 638 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Glsi01g1626 638 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 254 IPR017930 -
Glsi01g1626 638 ProSiteProfiles Response regulatory domain profile. 11 126 IPR001789 GO:0000160
Glsi01g1626 638 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 346 IPR045279 GO:0009736
Glsi01g1626 638 MobiDBLite consensus disorder prediction 297 321 - -
Glsi01g1626 638 MobiDBLite consensus disorder prediction 145 199 - -
Glsi01g1626 638 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Glsi01g1626 638 SMART REC_2 10 122 IPR001789 GO:0000160
Glsi01g1626 638 Pfam Response regulator receiver domain 12 119 IPR001789 GO:0000160
Glsi01g1626 638 MobiDBLite consensus disorder prediction 147 161 - -
Glsi01g1626 638 Pfam Myb-like DNA-binding domain 201 250 IPR001005 -
Glsi01g1626 638 FunFam Two-component response regulator 195 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1626 Glsi-ChrGlsi01 77332707 77338339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1626 8 274 Response Regulator Gene Family AT5G07210 41.379 9.76e-55 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi01g1626 Response_reg 1.3e-23 CL0304