Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1624 ATGAAGGACTACTTCACAAAATGGAAGAAGTATAAGGGGTTTCGAAGATTTCTTGATCTTGCCTGCGAAGATTCTTGGGTATTATTCAGATTCGGAGGTCTTTCTTCCGTGTTTTGTAGATCTGATTACTCTCTGGGTCAATCTGTTCCGGAAGGGGAAATGAGGCCTATTTTCTGTGGAAACTTTGAATATGATGCTCGGCAGTCTGATCTGGAGCGGCTTTTTAGAAGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGGTTTGCTTTTATCTATATGGAAGATGAGAGAGATGCCGAGGATGCAATCCGTGCTCTTGATCGGATAGAATTTGGTCGTAAGGGACGCAGACTTCGTGTGGAATGGACAAAACATGAGCGTGGCATTAGAAGGCCTGTTGGTTCAAGAAGATCTTCAGCTAATTCGAGGCCATCAAAGACTCTATTTGTTATTAATTTTGATACATATCATACCAGGACTAGGGACTTGGAGAGGCACTTTGAGCCATATGGCAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCATTTGTTCAGTATGAATCAGAGGATGAAGCTGCCAGAGCATTGGAAGCTACAAATATGAGCAAGTTAATGGATAGAGTTATTTCAGTTGAATTTGCTGTAAAGGATGATGATGATCGGCGCAATGGTTATAGCCCTGATAGAAGCAATGATCGCCTACATGATAGAAGCCGTGATAGAAGGCGGTCACCAAGTCCTTATCATGGAGAAAGGGGCAGCCCTGATTATGGTCGTGGCTCTAGCCCATATAGGAGGGAGAGGGGCAGCCCTGATTATGGTCGCAGCCGCAGCCGCAGCCGCAGCCAAAGTCCCCGCCGGAGTGCGAGAGCTAGCCCTGATTATAGTCACAGAAGCCATAGTCCATATAAAAGAGACAGAGATGGTTCTGATGCTGTTCGTCGCTCTAGCAATAGTCCTTATCATAAAGAGCAAGTGAGAAATGACCATGGCAACTCTCTCTCCCATAGTCCTGATGGGAGAGAGAGGTTGAGCCCTCAAATTGATAATGGTTCCAGCCGTAGTCCTTATTATACGGAGAGGGCTAGCCCTGAAAATGGCAATGGTTCTAGACGTAGTCCTGATGCAAGAGGGGATTCCAGTCCTAACAATGGGAATGGAGGTAGTCCAAATTCTGTGCCTGAGCCGAAGGACAGTCCCAACTATGGTGCTTCTGTAAGTCCTATGAATGAAAGATATCGCAGCCAATCACCTCCAGCTGAAGAATGA 1278 0.457 MKDYFTKWKKYKGFRRFLDLACEDSWVLFRFGGLSSVFCRSDYSLGQSVPEGEMRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRIEFGRKGRRLRVEWTKHERGIRRPVGSRRSSANSRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDEAARALEATNMSKLMDRVISVEFAVKDDDDRRNGYSPDRSNDRLHDRSRDRRRSPSPYHGERGSPDYGRGSSPYRRERGSPDYGRSRSRSRSQSPRRSARASPDYSHRSHSPYKRDRDGSDAVRRSSNSPYHKEQVRNDHGNSLSHSPDGRERLSPQIDNGSSRSPYYTERASPENGNGSRRSPDARGDSSPNNGNGGSPNSVPEPKDSPNYGASVSPMNERYRSQSPPAEE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1624 425 MobiDBLite consensus disorder prediction 294 340 - -
Glsi01g1624 425 MobiDBLite consensus disorder prediction 221 252 - -
Glsi01g1624 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 127 IPR000504 GO:0003723
Glsi01g1624 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 148 219 IPR000504 GO:0003723
Glsi01g1624 425 SUPERFAMILY RNA-binding domain, RBD 50 141 IPR035979 GO:0003676
Glsi01g1624 425 MobiDBLite consensus disorder prediction 349 417 - -
Glsi01g1624 425 FunFam Serine/arginine-rich splicing factor RS31 54 138 - -
Glsi01g1624 425 SMART rrm1_1 149 215 IPR000504 GO:0003723
Glsi01g1624 425 SMART rrm1_1 56 123 IPR000504 GO:0003723
Glsi01g1624 425 CDD RRM1_AtRSp31_like 55 126 - -
Glsi01g1624 425 MobiDBLite consensus disorder prediction 264 278 - -
Glsi01g1624 425 MobiDBLite consensus disorder prediction 221 425 - -
Glsi01g1624 425 Gene3D - 138 229 IPR012677 -
Glsi01g1624 425 Gene3D - 46 137 IPR012677 -
Glsi01g1624 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 115 IPR000504 GO:0003723
Glsi01g1624 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 150 212 IPR000504 GO:0003723
Glsi01g1624 425 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 149 380 - -
Glsi01g1624 425 SUPERFAMILY RNA-binding domain, RBD 133 225 IPR035979 GO:0003676
Glsi01g1624 425 FunFam Serine/arginine-rich splicing factor RS31 140 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1624 Glsi-ChrGlsi01 77309857 77313852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1624 57 214 Eukaryotic Initiation Factors Gene Family AT4G34110 24.855 5.82e-08 53.1