Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1612 ATGGAGTCTAGGTTGGCGACTCGTCGGAGGAGCTGTATCCGGCCGTCGGTTTCTCCGGTCAATAGCGAACCTAAGCATTTTCTGAAGGTTATACTTTCCTCAGCCATTCATGGCAAAAATCTGAGAATTCCACCGGAATTCATTAGAAGATTTGGGAATCAACTTTCTACTGAGACTACAATTACTGTTCCTGATGGTCTGCATTGGAAGATGGAATTAGAGAGATCCGGTGATGAGGTTTGGTTTTGCAACGGTTGGCAGGAATTCCAAAAGTATTATTCAATTAGTTATGGCTCCCTTTTGATGTTCACTTACGAAAGTAGTTCAAATTTCCATGTGCACATATTTGATATGACTGCTGCTGAGATTTACTATCCCTCTGACCATGATACAAGGAGCAAAAGGCGCACACAGGAAGATCAGGAAGAAATAATCGATCTAGATAACATGAATTCAAGGAAGAAGTTAATGTATAAGTCTCGAGAAAAAAATGATAGGAATCAATGTAACCAAAACCCCTCTAGAGGAATGTCTAATTCTTCTTCCAAAAGAGAGTTCAAGCCAGAAAATCCTTCGTTCACTGCAAAAATTAATGATAAAAGTGTGGTGAGGACTTTACTTGATTTGTGCATACATAGGATTTGTTTCATTTTGAGTCATGTTTATGGCGACTTAACCTTCCCCCCTCTTCTTCCCTCCCTTCTGCTGCAGTATATCCCTGCTGCATTTGCTGCAAGGTATTTGAACATTAAAGATTCGATAAAGCTCCAGAATTCTAATGGACGACAGTGGGAAGTTCATTGTTCTTCTCATAGTATTCAATCAAAAGCTATGCGAATCACGAAGGGATGGCTCACTTTTCGGAAGGATAACCATCTGGTGGAAGGAGATCGGCATTCAAGATTTCAAGCTCTAAATGGTAATGGGCATGATGTTGCTGAATATTTTGACATGCAGACTAGCAAACACTGGAATTTTAGATTGAAGTTGTATCCTTATGGAGACCTGATACGTTCTGGATACTCGTGA 1029 0.4023 MESRLATRRRSCIRPSVSPVNSEPKHFLKVILSSAIHGKNLRIPPEFIRRFGNQLSTETTITVPDGLHWKMELERSGDEVWFCNGWQEFQKYYSISYGSLLMFTYESSSNFHVHIFDMTAAEIYYPSDHDTRSKRRTQEDQEEIIDLDNMNSRKKLMYKSREKNDRNQCNQNPSRGMSNSSSKREFKPENPSFTAKINDKSVVRTLLDLCIHRICFILSHVYGDLTFPPLLPSLLLQYIPAAFAARYLNIKDSIKLQNSNGRQWEVHCSSHSIQSKAMRITKGWLTFRKDNHLVEGDRHSRFQALNGNGHDVAEYFDMQTSKHWNFRLKLYPYGDLIRSGYS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1612 342 Gene3D - 19 120 IPR015300 -
Glsi01g1612 342 CDD B3_DNA 238 297 IPR003340 GO:0003677
Glsi01g1612 342 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Glsi01g1612 342 ProSiteProfiles B3 DNA-binding domain profile. 222 319 IPR003340 GO:0003677
Glsi01g1612 342 SMART B3_2 226 308 IPR003340 GO:0003677
Glsi01g1612 342 SMART B3_2 27 119 IPR003340 GO:0003677
Glsi01g1612 342 MobiDBLite consensus disorder prediction 169 192 - -
Glsi01g1612 342 SUPERFAMILY DNA-binding pseudobarrel domain 237 297 IPR015300 -
Glsi01g1612 342 MobiDBLite consensus disorder prediction 159 192 - -
Glsi01g1612 342 SUPERFAMILY DNA-binding pseudobarrel domain 21 118 IPR015300 -
Glsi01g1612 342 CDD B3_DNA 25 117 IPR003340 GO:0003677
Glsi01g1612 342 Pfam B3 DNA binding domain 27 117 IPR003340 GO:0003677
Glsi01g1612 342 Pfam B3 DNA binding domain 238 297 IPR003340 GO:0003677
Glsi01g1612 342 PANTHER B3 DOMAIN-CONTAINING 20 297 - -
Glsi01g1612 342 Gene3D - 175 304 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1612 Glsi-ChrGlsi01 77117823 77119743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1612 27 297 B3 DNA Binding Superfamily AT3G18990 31.250 1.23e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi01g1612 B3 1.4e-11 CL0405