Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1603 ATGGGTTTTCTCCGGCGACTTTTTGGCGGCAAAAAATCGGGTTTGTCGGCAGGAGGACCCGACAAGTCCGGGTCTGAACCGGGTAAGAACAAACGGAGATGGTGCTTCAGCAAACAGGGTAAATACAAATCCGAAACGGACGCTACCACATCTTCGGCTCCAATCAATGATCCCTTGGACGCTAATAATCATGCTATTGCCGTGGCGGCAGCTACGGCGGCTGCGGCAGAGGCCGCCCTGGCGGCCGCCCATGCTGCAGCGGAGGTTGTGAGGCTTACAAGTAGTAGCGGCAGCGGGGCTCCTAGTACTAGCACTAGCCTACCCGACACCGCGGTGCACAGTAGCGAGAGCCAGCACCGATGGCCGGAAGATATCGCCGCCGTTAAGATACAGTCGGCGTTCCGTGGTTACTTGGCAAAGCGGGCACTGAGGGCACTGAGAGCATTGGTGAAGTTGCAAGCATTGGTAAGAGGGCACATAGTAAGGAAGCAAACTGCAGACTTGGTGAGGCGCATGCAAACATTGGTGAGGCTGCAGTCCAGGGCACGTGCAAGTCGTGTGCACTTGCCAGATACTCTTCATTCCAGATACTATGCACTATCTCAACACCCTATTCCTGAAGATTATGAGCACCCACTTAGTACCTGTAGTACAAGATTTGATGGATCTTCTGTCCTCAAGAGATGTAGGTCCAACGCAAATTACAGGGACATTGGTTCAGAAAGAGCAAGGTTTGGTTCCAATTGGTTTAACCATTGTATAGAAGAAAGTGTTTGGAACCATCCTCGAGATGATGAGAAGAGTGACAAGATTCTTGAGGTTGATACTTGGAAGCCACACTTCACAAATGAGAATTTTATGGCATATGACCCTCTATCAAAGCCTTCAACGAAACCTCTAAGCCAAAAAAGCCTGAGCTCTATGAGTTTTCGAAAGGGAAAAGAAGAAATAGCTTCAAGAACTGCTGAGCATAGTCCTCAGACATTTTCTGCTGGAAATGGTGCAAGAAGAAGTCCCTTTGTTACACCCACCAAGAGTGAGTGTTCGTGGGGCTTCTTCAGTGGGTATTCTGGTCACCCTAATTACATGGCAAATACTGAATCTTCTAGAGCTAAGGTTAGGTCACAGAGTGCCCCAAGGCAGAGGCTTTGGAATGCTGATTTCAGAAGCCAAAGCTTTGCAGCCTCAAGTCGCTTTAACAGAATTGGGAGTACCATTTTAAGGTGA 1227 0.4914 MGFLRRLFGGKKSGLSAGGPDKSGSEPGKNKRRWCFSKQGKYKSETDATTSSAPINDPLDANNHAIAVAAATAAAAEAALAAAHAAAEVVRLTSSSGSGAPSTSTSLPDTAVHSSESQHRWPEDIAAVKIQSAFRGYLAKRALRALRALVKLQALVRGHIVRKQTADLVRRMQTLVRLQSRARASRVHLPDTLHSRYYALSQHPIPEDYEHPLSTCSTRFDGSSVLKRCRSNANYRDIGSERARFGSNWFNHCIEESVWNHPRDDEKSDKILEVDTWKPHFTNENFMAYDPLSKPSTKPLSQKSLSSMSFRKGKEEIASRTAEHSPQTFSAGNGARRSPFVTPTKSECSWGFFSGYSGHPNYMANTESSRAKVRSQSAPRQRLWNADFRSQSFAASSRFNRIGSTILR 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1603 408 MobiDBLite consensus disorder prediction 94 118 - -
Glsi01g1603 408 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Glsi01g1603 408 MobiDBLite consensus disorder prediction 322 340 - -
Glsi01g1603 408 Gene3D - 123 175 - -
Glsi01g1603 408 MobiDBLite consensus disorder prediction 94 115 - -
Glsi01g1603 408 SMART iq_5 145 166 IPR000048 GO:0005515
Glsi01g1603 408 SMART iq_5 122 144 IPR000048 GO:0005515
Glsi01g1603 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 167 IPR027417 -
Glsi01g1603 408 MobiDBLite consensus disorder prediction 318 340 - -
Glsi01g1603 408 PANTHER IQ-DOMAIN 5-RELATED 19 390 - -
Glsi01g1603 408 MobiDBLite consensus disorder prediction 42 57 - -
Glsi01g1603 408 MobiDBLite consensus disorder prediction 1 57 - -
Glsi01g1603 408 Pfam Protein of unknown function (DUF4005) 331 390 IPR025064 -
Glsi01g1603 408 ProSiteProfiles IQ motif profile. 147 174 IPR000048 GO:0005515
Glsi01g1603 408 Pfam IQ calmodulin-binding motif 126 144 IPR000048 GO:0005515
Glsi01g1603 408 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1603 Glsi-ChrGlsi01 76974202 76977293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1603 1 383 IQD Protein Family AT5G62070 47.436 4.18e-66 214