Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1600 ATGCAAAATTCGTCTGCTTTCTCTTTCTCCACTAAAAGGAAAATGGAGGGCCATATTGGTGAAATGGGTCTGATTGGGGAAAATTTTGATCCTAGTTTGATCGGGAGGCTTAGGGATGATGGGTACGAGAGCCGTTCTGGGAGTGATAATTTTGAAGGCGTATCAGGGGATGATCAAGATGCTGGTGATGATCTTCCGCAGAGAAGGAAGAAATACCATAGACACACTCCTCACCAAATCCAAGAGCTTGAAGCTTTCTTTAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGATCGGAACTTAGTAGGAGGCTTGGCTTGGAGAATAAGCAAGTGAAGTTCTGGTTTCAAAATCGACGAACCCAGATGAAGACCCAACTGGAGCGCCATGAGAACTTGATTCTGAGACAAGAGAACGATAAGCTCAGAGCTGAGAATAGTTTGATGAAAGAAGCCATGGCAAGTCCAATATGCAATAATTGTGGAGGCCCAGCCATTCCTGGCCAAATCTCATTCGAGGAGCACCAACTTAGAATTGAAAATGCTCGATTAAAGGATGAACTGAACCGTATCTGTGCCTTGGCAAACAAGTTTCTGGGCAGGCCACTCTCATCCATGGCTCTTCCAAGCTCAAATTGTGGTCTAGAACTCGCCATTGGAACAAATGGGATTGGTTGTTCAAGCACTTTGTCTATGGGACTTGATTTGGGAGATGGGATTGGAATGCCTGCTGGGATTAGATCACCAGTGGGGATGATGGCAAATGAAGCCCAGATTGAGAGATCTATGCTTATAGACCTTGCATTGTCTGCTATGGAGGAATTGATCAAGATGGCTAAAGCAGATAGCCCTCTTTGGACTAAGAGTTTGGATGGCGAGAAGGAAGTGCTGAACCATGAGGAGTATGCAAGGATGTTTCCTCCTTGTATTGGTCCAAAACCTACTGGTCATGTTACTGAAGCTACAAGAGAAACTGGGATAGTCATCATCAACAGTTTGGCCCTTGTTGAAACATTGATGGACGCGAATCGATGGGCGGAGATGTTTCCATCAATGATTGCTAGAGCATATACCCTTGATGTAATATCCAATGGCATAGGTGGAACCAGAAATGGTGCTTTACAATTGATGCATGCTGAGGTTCAATTGCTTTCGCCACTAGTCCCAGTTCGTCAATTGAGGTTCCTCCGATTGTGCAAGCAGCATGCAGAAGGTTTATGGGTTGTGGTTGATGTTTCAGTTGACATTGGCTGTGACCCCACCAATGCTCACCCTTTCATGACCTGCAGGAGGCTTCCTTCTGGCTGTGTTATACAGGATATGCCCAACGGTTACTCCAAGATTACTTGGGTTGAGCACTCTCAGTATGATGAGGGCGTTGTCCACCAACTTTACCGTCCCATGGTTCACTCGGGCATTGGCTTTGGTGCTCATAGGTGGATCGCTACCCTCCAAAGGCAATGTGAATGCTTGGCCATCTTCATGTCTTCTTCCTTCCCTAATGAGGATCACTCTGCCTTAAGCCAAGCTGGTCGGAGGAGCATGTTGAGGCTGGCACAACGCATGACCGACAGCTTCTGTTCCGGGGTTTGTGCTTCGTCTGCCCGCAAGTGGGACAGCCTTCATGTGGGAACTTTGGGCGATGACATGAAGGTGATGACTAGGAAAAACGTGGATGATCCAGGTGAACCTCCTGGGATCTTGCTGAGTGCTGCAACTTCTGTTTGGATGCCGGTGTCGCGGCAAAGGTTGTTCGACTTCCTGCGCGATGAACGTTTGAGAAGCGAGTGGGACATCTTGTCCAATGTTGCACCAATGCAGGAGATGGTCCGTATTCCCATAGGACAAGGACATGGAAACTGCGTTTCTCTTCTTCGTGCTAACGCTGCTAATGCGAACGAGAGCAACATGGTAATATTGCAAGAGACATGGGCGGATGCATCAAGCTCAGTGGTAGTGAAATATAGAGATGGTAAAGAAGGCAGAGAGGAAGGGTCGCGTAAGGAAGGTTTTGAGTCAAGAACGAACCGCGAAAGAGGAGCTTGGAGATGGAGTTCAGGGGAATTGTGGTTCGGGTATTGA 2082 0.4736 MQNSSAFSFSTKRKMEGHIGEMGLIGENFDPSLIGRLRDDGYESRSGSDNFEGVSGDDQDAGDDLPQRRKKYHRHTPHQIQELEAFFKECPHPDEKQRSELSRRLGLENKQVKFWFQNRRTQMKTQLERHENLILRQENDKLRAENSLMKEAMASPICNNCGGPAIPGQISFEEHQLRIENARLKDELNRICALANKFLGRPLSSMALPSSNCGLELAIGTNGIGCSSTLSMGLDLGDGIGMPAGIRSPVGMMANEAQIERSMLIDLALSAMEELIKMAKADSPLWTKSLDGEKEVLNHEEYARMFPPCIGPKPTGHVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAYTLDVISNGIGGTRNGALQLMHAEVQLLSPLVPVRQLRFLRLCKQHAEGLWVVVDVSVDIGCDPTNAHPFMTCRRLPSGCVIQDMPNGYSKITWVEHSQYDEGVVHQLYRPMVHSGIGFGAHRWIATLQRQCECLAIFMSSSFPNEDHSALSQAGRRSMLRLAQRMTDSFCSGVCASSARKWDSLHVGTLGDDMKVMTRKNVDDPGEPPGILLSAATSVWMPVSRQRLFDFLRDERLRSEWDILSNVAPMQEMVRIPIGQGHGNCVSLLRANAANANESNMVILQETWADASSSVVVKYRDGKEGREEGSRKEGFESRTNRERGAWRWSSGELWFGY 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1600 693 Gene3D - 266 486 IPR023393 -
Glsi01g1600 693 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Glsi01g1600 693 ProSiteProfiles START domain profile. 257 493 IPR002913 GO:0008289
Glsi01g1600 693 Coils Coil 120 147 - -
Glsi01g1600 693 FunFam Homeobox-leucine zipper protein HDG1 55 142 - -
Glsi01g1600 693 CDD homeodomain 69 126 IPR001356 GO:0003677
Glsi01g1600 693 SMART HOX_1 68 130 IPR001356 GO:0003677
Glsi01g1600 693 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 67 653 IPR042160 -
Glsi01g1600 693 ProSitePatterns 'Homeobox' domain signature. 101 124 IPR017970 GO:0000981|GO:0006355
Glsi01g1600 693 Gene3D - 57 141 - -
Glsi01g1600 693 Pfam Homeodomain 69 124 IPR001356 GO:0003677
Glsi01g1600 693 SUPERFAMILY Bet v1-like 259 490 - -
Glsi01g1600 693 SMART START_1 266 490 IPR002913 GO:0008289
Glsi01g1600 693 CDD START_ArGLABRA2_like 261 489 - -
Glsi01g1600 693 MobiDBLite consensus disorder prediction 35 76 - -
Glsi01g1600 693 SUPERFAMILY Homeodomain-like 55 126 IPR009057 -
Glsi01g1600 693 SUPERFAMILY Bet v1-like 510 655 - -
Glsi01g1600 693 FunFam Homeobox-leucine zipper protein GLABRA 2 266 489 - -
Glsi01g1600 693 Pfam START domain 267 490 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1600 Glsi-ChrGlsi01 76947917 76955398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1600 20 653 Homeobox Transcription Factor Family AT3G61150 58.462 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi01g1600 START 1.7e-50 CL0209