Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1597 ATGGCTATGGCGTTCAATCTTCAACATTTCTATCTTTTCGTGTTCCATCTCTGCTATTTGCTCGCTACCGCGGTTGTATTCCAGAATGAAGAAAACCCAGAAAAAGATTTTCTCCTTTCATTCAAAACCAGTCTAGAAAACCCCCAACTTCTTGCTTCATGGAGTTCTTCGACCCCTCACTGCAACTGGATTGGCGTCACTTGCCAACTCGGTCGAGTTACTTCACTCTCTCTTCCAACTCGGTCCCTCAAAGGCCCACTCTCTTCTTCCCTCTTCTCCATTTCTGGCCTCACCGTCCTCAACTTGTCCTCCAATGCTTTCTTCGGTGAAATTCCTCCACAGATAGCTAATCTGCGAAACTTGAAGGAGCTCAATCTTAGTGATAATCAGCTTTCTGGAGGAATTCCGAGCGAGCTTGGTGGGTTGATTCAGCTAAAAATTCTTGAGCTGGGCTCCAACTCATTTACCGGAAAATTCCCGCCGGAGCTGGGGTCATTGACAAAGCTTCAGACCCTCGACCTCTCCGGTAATGCTCTAACCGGAACCATACCGGAAAATATCGGAAACCTGACCCATCTCCAGTTCCTTGACCTCAGTAACAATCTTCTCTCAGGTTCCCTCCCGTTAACTCTCTTCACAGGAACTCTGTCTTTGATTTCCCTGGACGTTTCAAACAATTCATTTTCTGGTGCATTACCACCGGAAATTGGTAACTTGAGGAATATCACTGCCCTTTACATTGGCATTAATAAATTTATCGGTATATTGCCTTCTGAAATTGGTGAGCTGTCGCGGCTTGAGGTCTTCTATTCGCCTTCTTGTTTTATAGAAGGTCCATTGCCTGAAGAAATGTCGAAACTGAAGTCATTGACTAAACTTGACCTTTCTTACAACCCCTTGAAGTGTTTGATCCCAAAGTTTATTGGGAAGTTGCAGAATTTGAGAATACTGAACCTTGCTTTCGTGCAGCTCAATGGGTCCATACCATCTGAGCTTGGAAGTTGTAGGAACTTGCGGTCTGTTATGCTTTCTTTCAACTCGCTTTCTGGGTCATTGCCAGAGAAGCTTTCTGAGCTCCCCATGATAACATTTTCAGCTGCAAATAATCAGCTCCACGGACCGTTGCCTGCTTGGGTTGGAAAGTGGAATGGTATAAGGTCTGTTTTGCTTTCGGAAAATCGATTTTCTGGGAAAATTCCTCCTGAGCTTGGGAATTGTTCTTTACTGGAGCACCTTAGTTTGAGCAGTAACTTACTGACAGGTTCCATACCTGAGGACCTCTGTTATGCTGCTTCACTTTTGGAGATTGATCTTGATGATAACTTCCTTTCCGGTACAATTGAGAAAGCATTTACTAAGTGTAAGAACCTTACCCAGTTAGTTTTGACGAACAATCAGATTGTTGGTTCTATACCTCAGTACCTTTCAGAGCTTCCATTGATGGTGCTTGACCTAGACTCAAACAATTTTAGTGGAAATATACCTTCAAGTCTGTGGAATTCATCAACTCTAATGGAATTTTCTGCTGCTAATAACCGTTTAGAGGGCTCTCTTCCTGTGGAGATTGGGAATGCAGTTATTCTAGAGAGGCTTGTTCTTTGTAACAATCTACTGACAGGTTCTATACCTAAGGAAATTGGAAGTCTCACAAGTCTTTCTGTTCTTAATTTGAATGGAAATCTACTTAAAGGGAATATCCCAACTGAGCTTGGAGACTGCATTTTGCTGACAACATTGGACCTTGGAAATAATCAACTCAACGGGTCAATTCCAGATAAATTGGCGGAACTAAACCAGTTACAATGCCTCGTTCTTTCCCACAATAATCTGTCTGGCTCCATTCCTGCAAAACCATCTTCATATTTTAGACAACTTACCATCCCTGATTTGAGCTTTGTTCAACACCTAGGAGTATTTGATCTGTCCCACAATAGATTGTCTGGGACTATACCTGATGAATTGGGGAGCTGTGTGGTGGTTGTGGATCTTTTGATCAGCAACAACATGCTTTCTGGGAGTCTTCCAAGTTCACTCTCTCGCTTGACAAATCTTACAACCTTGGATTTGTCTGGTAACTTCTTGTCAGGTTTCATTCCACCTGATCTTGGAGATTCCCTCAAGCTACAGGGATTATATCTGGGACAGAATCAGCTCACGGGTACCATCCCTGGAAGTTTTGGAAAGATGAGTAGTCTGGTGAAGCTGAATTTGACAGGAAATAGGTTATCTGGTCCAATTCCTGATAGTTTTGGGACCATGAAAGAGCTGACACACTTGGATTTGAGCTCTAATGAGCTCAATGGCGAGCTTCCATCTTCTCTATCAGGTGTACAAAGTCTTGTTGGGCTTTACGTGCAGCAGAACAGACTTGCAGGTCAAGTAGGGGAGCTCTTCTCAAACTCCATGATATGGAGGATTGAGACAATTAATTTAAGTGATAACTACTTCAATGGGTATTTGCCAAAATCTTTGGGAAACCTGTCATACTTGACAAATTTGGATCTTCACGCAAATATGTTTACTGGAGAGATTCCTTCAGACCTTGGGAATTTAGTGCAACTGGAGTATTTTGATGTTTCTTGTAACAGGCTATCAGGAAAGATTCCTGAGAAAATATGCAACCTAGTTAATCTGAATCACCTAGATTTGTCTCAAAACAGATTGGAAGGGCCTATACCCAGAAGTGGTATTTGTCAGAATATATCCAGAGTTAGATTTACAGGGAACAAAAATCTTTGTGGGCAGATTTTGGGTCTAGATTGTCCGATCAAAAACATTGATAGATTTGCACTATTTAGCGCATGGAGACTGGCTGGAATTGCCTTTACAATCACACTCATGGCTCTAAGCATTGCTTTTGTTCTGCACCGATGGATTAGCGGGAGACAAAATGATCCTGAGGAACACAGTCGAAACCATTATGTGGATCAAAATCTTTATTTCTTGAGTAGTAGCAGGTCAAAGGAACCTTTGAGTATCAATGTAGCAATGTTTGAGCAGCCTCTTTTGAAATTAACTTTGATCGATATCCTTGAAGCTACTGACAACTTCAGCAAGACAAATATTATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACCTTACCTAATGGTAAAACAGTTGCTGTGAAGAAGCTGAGTGAAACTAAAACACAGGGTCATCGTGAGTTCATGGCTGAAATGGAAACTTTGGGCAAGGTAAAGCATCAGAATCTTGTTCAATTGCTTGGATATTGCTCCGTGGGTGAGGAGAAACTCCTTGTTTATGAATACATGGCAAATGGAAGCTTAGATCTTTGGTTGAGAAACAGGACGGGAGCCCTTGAAGTCCTTGACTGGGACAAACGCTACAAAGTTGCAACTGGTGCAGCTCGAGGATTAGCTTTCCTTCATCATGGGTTCATCCCCCACATTATTCACAGGGATGTTAAAGCTAGCAACATCTTGCTCAATGAAGATTTCGAGCCAAAAGTTGCAGACTTTGGAATGGCAAGACTGATCAGTGCCTGTGAGACCCATATCACCACTGACATTGCTGGAACATTTGGATACATTCCACCAGAGTATGGACAGAGTGGGAGGTCCACAACAAGAGGAGATGTCTATAGTTTTGGCGTCATTTTGCTTGAATTGCTGACTGGAAAAGAGCCAACTGGACCTGATTTCAAAGAGATTGAAGGTGGAAACTTGGTTGGATGGGTTTTTCAGACGATCAAGAAGGGGCAGGCTGCTGATGTTCTTGATCCCACGGTTCTGGATGCAGATTCTAAGCAGATGATGCTTCAAATGCTGCAGATTGCTTGTGTATGCCTCTCTGATAATCCTGCAAATAGGCCCACTATGCTTCAAGTGCTCAAGTTTCTGAAGGGGATCAAAGGAGAGTAG 3888 0.4272 MAMAFNLQHFYLFVFHLCYLLATAVVFQNEENPEKDFLLSFKTSLENPQLLASWSSSTPHCNWIGVTCQLGRVTSLSLPTRSLKGPLSSSLFSISGLTVLNLSSNAFFGEIPPQIANLRNLKELNLSDNQLSGGIPSELGGLIQLKILELGSNSFTGKFPPELGSLTKLQTLDLSGNALTGTIPENIGNLTHLQFLDLSNNLLSGSLPLTLFTGTLSLISLDVSNNSFSGALPPEIGNLRNITALYIGINKFIGILPSEIGELSRLEVFYSPSCFIEGPLPEEMSKLKSLTKLDLSYNPLKCLIPKFIGKLQNLRILNLAFVQLNGSIPSELGSCRNLRSVMLSFNSLSGSLPEKLSELPMITFSAANNQLHGPLPAWVGKWNGIRSVLLSENRFSGKIPPELGNCSLLEHLSLSSNLLTGSIPEDLCYAASLLEIDLDDNFLSGTIEKAFTKCKNLTQLVLTNNQIVGSIPQYLSELPLMVLDLDSNNFSGNIPSSLWNSSTLMEFSAANNRLEGSLPVEIGNAVILERLVLCNNLLTGSIPKEIGSLTSLSVLNLNGNLLKGNIPTELGDCILLTTLDLGNNQLNGSIPDKLAELNQLQCLVLSHNNLSGSIPAKPSSYFRQLTIPDLSFVQHLGVFDLSHNRLSGTIPDELGSCVVVVDLLISNNMLSGSLPSSLSRLTNLTTLDLSGNFLSGFIPPDLGDSLKLQGLYLGQNQLTGTIPGSFGKMSSLVKLNLTGNRLSGPIPDSFGTMKELTHLDLSSNELNGELPSSLSGVQSLVGLYVQQNRLAGQVGELFSNSMIWRIETINLSDNYFNGYLPKSLGNLSYLTNLDLHANMFTGEIPSDLGNLVQLEYFDVSCNRLSGKIPEKICNLVNLNHLDLSQNRLEGPIPRSGICQNISRVRFTGNKNLCGQILGLDCPIKNIDRFALFSAWRLAGIAFTITLMALSIAFVLHRWISGRQNDPEEHSRNHYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLIDILEATDNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSETKTQGHREFMAEMETLGKVKHQNLVQLLGYCSVGEEKLLVYEYMANGSLDLWLRNRTGALEVLDWDKRYKVATGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGMARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELLTGKEPTGPDFKEIEGGNLVGWVFQTIKKGQAADVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMLQVLKFLKGIKGE 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1597 1295 FunFam serine/threonine-protein kinase BRI1-like 2 1093 1295 - -
Glsi01g1597 1295 Pfam Leucine rich repeat 682 742 IPR001611 GO:0005515
Glsi01g1597 1295 Pfam Leucine rich repeat 96 154 IPR001611 GO:0005515
Glsi01g1597 1295 FunFam LRR receptor-like serine/threonine-protein kinase 144 214 - -
Glsi01g1597 1295 SMART LRR_typ_2 287 309 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 311 335 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 549 573 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 753 777 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 875 900 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 118 142 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 166 189 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 190 214 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 633 657 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 729 752 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 681 705 IPR003591 -
Glsi01g1597 1295 SMART LRR_typ_2 406 430 IPR003591 -
Glsi01g1597 1295 SUPERFAMILY L domain-like 622 914 - -
Glsi01g1597 1295 FunFam Leucine-rich repeat receptor-like kinase 33 143 - -
Glsi01g1597 1295 FunFam leucine-rich repeat receptor protein kinase EMS1 215 362 - -
Glsi01g1597 1295 Pfam Protein tyrosine and serine/threonine kinase 1020 1289 IPR001245 GO:0004672|GO:0006468
Glsi01g1597 1295 PRINTS Leucine-rich repeat signature 875 888 - -
Glsi01g1597 1295 PRINTS Leucine-rich repeat signature 756 769 - -
Glsi01g1597 1295 FunFam serine/threonine-protein kinase BRI1-like 2 978 1092 - -
Glsi01g1597 1295 FunFam Uncharacterized protein 363 627 - -
Glsi01g1597 1295 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 681 1290 - -
Glsi01g1597 1295 SUPERFAMILY RNI-like 304 616 - -
Glsi01g1597 1295 Pfam Leucine Rich Repeat 756 776 IPR001611 GO:0005515
Glsi01g1597 1295 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Glsi01g1597 1295 Pfam Leucine Rich repeat 166 181 IPR001611 GO:0005515
Glsi01g1597 1295 Gene3D Ribonuclease Inhibitor 216 362 IPR032675 -
Glsi01g1597 1295 Gene3D Ribonuclease Inhibitor 363 622 IPR032675 -
Glsi01g1597 1295 Gene3D Ribonuclease Inhibitor 623 924 IPR032675 -
Glsi01g1597 1295 SUPERFAMILY L domain-like 48 362 - -
Glsi01g1597 1295 Gene3D Transferase(Phosphotransferase) domain 1 1093 1295 - -
Glsi01g1597 1295 ProSiteProfiles Protein kinase domain profile. 1017 1295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1597 1295 Gene3D Phosphorylase Kinase; domain 1 980 1092 - -
Glsi01g1597 1295 Gene3D Ribonuclease Inhibitor 142 215 IPR032675 -
Glsi01g1597 1295 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 629 925 - -
Glsi01g1597 1295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1139 1151 IPR008271 GO:0004672|GO:0006468
Glsi01g1597 1295 ProSitePatterns Protein kinases ATP-binding region signature. 1023 1046 IPR017441 GO:0005524
Glsi01g1597 1295 Gene3D Ribonuclease Inhibitor 33 141 IPR032675 -
Glsi01g1597 1295 SUPERFAMILY Protein kinase-like (PK-like) 998 1289 IPR011009 -
Glsi01g1597 1295 SMART serkin_6 1017 1289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1597 1295 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Glsi01g1597 1295 SMART LRR_sd22_2 851 877 - -
Glsi01g1597 1295 SMART LRR_sd22_2 454 477 - -
Glsi01g1597 1295 SMART LRR_sd22_2 166 189 - -
Glsi01g1597 1295 SMART LRR_sd22_2 287 306 - -
Glsi01g1597 1295 SMART LRR_sd22_2 681 702 - -
Glsi01g1597 1295 SMART LRR_sd22_2 753 779 - -
Glsi01g1597 1295 SMART LRR_sd22_2 190 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1597 Glsi-ChrGlsi01 76914143 76918030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1597 34 1292 Receptor kinase-like Gene Family AT5G07280 59.543 0.0 1426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Glsi01g1597 PK_Tyr_Ser-Thr 4e-47 CL0016