Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1596 ATGGCTCCGACGCCGGTGGAACAGAACGGTGAGTCCACGGCTGGTGACTCTATGAGATCTATTCCGACGCCGTTTCTCACCAAAACTTATCAGCTCGTCGACGATAATATTATAGACGATGTGATCTCGTGGAACGAAGATGGATCCGCTTTCATCGTTTGGAACCCTACCGTTTTCGCTAGGGATTTGCTTCCTAAATATTTTAAGCACAACAACTTCTCTAGCTTTGTTCGCCAACTCAACACCTATGGATTCAGAAAGGTTGTATCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGCAGAGGAGAGAAACGGCTTCTGTGTGAGATACAGCGGCGGAAGATTTCATCGCCTTCGACGGGGACAGCTGCGCCGGTGGCGGCTGGGGCAACTGCGACCGTGGCAGTTCCGGCGCCGGTGGCGTTGTCTGCGATACCGACAGCGATGCCGATCATATCGCCATCAAACTCGGAGGAGGAACAAGTGATTTCGTCGAATTCATCGTCCTCGAAAGCTCCGGCTGAGCTATTAGACGAGAATGAGAGGCTGCGAAAAGAGAACGTTCAGTTGGCGAAGGAGTTAGCGGAGATGAGATCTCTTTGTAACAATATATTCAATCTGATGTCGAATTATGCCAATAACCAAACAGATAGCTGTGTGCAAGGAAGAGAGGGCATGAAACCGCTGGATTTGATGCCGGCTAATCGGAACTCCGGGGAGGAGGAGTCGTCGGCGATGGAGGTGCTGGAGGAAGAGATAAATCCGAAGCTGTTTGGGGTGGCGATTGGTGCGAAGCGAGCGAGAGAGGCCGGAGGAGGAGGAGCGGAGGAGAACACAGTGTTAAGCTTACATCAGCCGGGGCCTTCGGAAGTGAAATCTGAGCCGTTAGATTGTCAGAACGTTCGGGAGAATCAGGAGACACCGTGGCTTAATCAATGCCACATGGCGAATCAGAGAGTGTGCAACTAA 972 0.5154 MAPTPVEQNGESTAGDSMRSIPTPFLTKTYQLVDDNIIDDVISWNEDGSAFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVSDRWEFSNECFRRGEKRLLCEIQRRKISSPSTGTAAPVAAGATATVAVPAPVALSAIPTAMPIISPSNSEEEQVISSNSSSSKAPAELLDENERLRKENVQLAKELAEMRSLCNNIFNLMSNYANNQTDSCVQGREGMKPLDLMPANRNSGEEESSAMEVLEEEINPKLFGVAIGAKRAREAGGGGAEENTVLSLHQPGPSEVKSEPLDCQNVRENQETPWLNQCHMANQRVCN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1596 323 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g1596 323 MobiDBLite consensus disorder prediction 1 20 - -
Glsi01g1596 323 MobiDBLite consensus disorder prediction 157 175 - -
Glsi01g1596 323 MobiDBLite consensus disorder prediction 157 180 - -
Glsi01g1596 323 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g1596 323 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g1596 323 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g1596 323 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g1596 323 Gene3D - 18 115 IPR036388 -
Glsi01g1596 323 Coils Coil 181 201 - -
Glsi01g1596 323 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi01g1596 323 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Glsi01g1596 323 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 239 IPR027725 -
Glsi01g1596 323 FunFam Heat stress transcription factor B-4 17 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1596 Glsi-ChrGlsi01 76886084 76887150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1596 10 323 HSF AT5G62020 48.943 9.48e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi01g1596 HSF_DNA-bind 3.4e-32 CL0123