Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1584 ATGGGTGTGAAGCATTTGTGGGATATCCTAGAATCATGCAAGAAAACAGTTCCACTTCACCATCTCCAGAACAAGAGGGTATGCATAGATCTCTCGTGTTGGATGGTGCAACTTCAGAATGTGAGCAAATCACACTCGTGTGTGAAGGAGAAAGTCTACCTCAGAGGTCTCTTTCACCGCCTTAGAGCACTCATTGCTTTGAATTGCAGCGTAATTTTCGTTACAGATGGATCAATTCCTGCCATTAAATTATCAACTTATAGGCAACGCTTAAACTCTGGAAAAGAGCCAGCGCAAAATGAAAGTAACTTACAGAAAGTATCTTCTTTACGGAGAAACATGGGATCTCAGTTTTCTTGCATGATAAAAGAGGCTAAAGTCTTGGGGATGGCTCTTGGCATCCCTTGTTTGAGTGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAACTTTGAATTATTATGTGATGGATGTTTCAGTTCAGATTCGGATATCTTTCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGTTATGAGATGGCTGACATTGAAAGAAAACTTGGATTTGGAAAGGACTCATTGATTGCTCTTGCCTTACTTCTTGGCAGTGACTACAATCAAGGAGTTTATGGTTTGGGTCCTGAGTCAGCTTGTCAGATAGTCAAATCAATTGGGGACAAATTTGTGCTTCAAAAAATTGCTTCTGAAGGAATTGAATGTGTGAAAAGAATAAAAGGTGCAAAGAAACTGGGGCAAGCTTTCAAGAGCAACAACAAAGAAAATATATTGGACCATGATATGAAATTAAGTCATGGATGTGTAAATAATTCACAAAGAGATTGTCACTTCTTGCAAGTTATCAATGCTTATATGAAGCCAAAATGCCACCCGGCAGATTCTGATATTGTGATGAGGGTTCTTGCACAATATCCGTTTCAACGTAGTAAACTCCATCAGACATGTGCTGAATTCTTTCAGTGGCCTCCAGAGAAAACAGATGAGTATATCCTTCCAAAGATTGCTGAAAGAGATTTACGGCGACTTGCCAATTTGCACTTAACTTCATCAGAAGCTGGAGTGAACCTTCCTTTACATGAGATCTCTGTAAAGTGTCCTGTTTCAGAAATAATTAAGTGCCGAAAAGTTCAAGGAAGAGAATGCTATGAGGTGTTATGGAATGAAATGGATGGACTTAGAACTTCAGTAGTACCAGCAAATCTTTTAGAAAGTGCCTGTCCTGAGAAGATTTTAGAGTTCAAGGAGAAAGAAGCTCAACTGAAGAAACATGTTCAGAAAAGAAAACCAAAGAAAATTGAAACTACATCTTCTGTGGCTGAACTTGACCTAAAATTGAAGAATCTCTTGCTGGATATCAATCTGGGAGACCATGCCAATCAGAATACCTCTGATTTGTCGGGACAGGTATTTCAAGATACAACTGCAATGGCTGAAGCTTCTCTGAATGACCAAGACTTGTTGCATTCATCGCTTGAAGTTGAACACATTGGTTGGAATCAGAATATCAGTAATATATCTAACCATCAGGCTGATTCCAGCATAGTTGAAAATGAGGTCATTGATCTTCTGAGCCCTTCCCCACCTAGGCAATCCCATGCTTCCTCCAAATGTCAACAATCTAATGGTCAACATATTGAGGTGATTAACTTGAGTGACTCAGAAAATGACATGTCACCTGAACACAAGAGGAAAGCAAAGGAGCTGAGATTGTTCTTAGCAAGTATTAGAAATGACATCCATTGA 1794 0.3958 MGVKHLWDILESCKKTVPLHHLQNKRVCIDLSCWMVQLQNVSKSHSCVKEKVYLRGLFHRLRALIALNCSVIFVTDGSIPAIKLSTYRQRLNSGKEPAQNESNLQKVSSLRRNMGSQFSCMIKEAKVLGMALGIPCLSGIEEAEAQCALLNFELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMADIERKLGFGKDSLIALALLLGSDYNQGVYGLGPESACQIVKSIGDKFVLQKIASEGIECVKRIKGAKKLGQAFKSNNKENILDHDMKLSHGCVNNSQRDCHFLQVINAYMKPKCHPADSDIVMRVLAQYPFQRSKLHQTCAEFFQWPPEKTDEYILPKIAERDLRRLANLHLTSSEAGVNLPLHEISVKCPVSEIIKCRKVQGRECYEVLWNEMDGLRTSVVPANLLESACPEKILEFKEKEAQLKKHVQKRKPKKIETTSSVAELDLKLKNLLLDINLGDHANQNTSDLSGQVFQDTTAMAEASLNDQDLLHSSLEVEHIGWNQNISNISNHQADSSIVENEVIDLLSPSPPRQSHASSKCQQSNGQHIEVINLSDSENDMSPEHKRKAKELRLFLASIRNDIH 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1584 597 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Glsi01g1584 597 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Glsi01g1584 597 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Glsi01g1584 597 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Glsi01g1584 597 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Glsi01g1584 597 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Glsi01g1584 597 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 548 IPR006084 -
Glsi01g1584 597 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Glsi01g1584 597 SMART xpgn3 1 97 IPR006085 GO:0004518
Glsi01g1584 597 Gene3D - 2 199 - -
Glsi01g1584 597 SMART xpgineu 130 200 IPR006086 GO:0004518
Glsi01g1584 597 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 201 362 IPR036279 -
Glsi01g1584 597 Gene3D - 201 278 - -
Glsi01g1584 597 FunFam flap endonuclease GEN-like 2 2 199 - -
Glsi01g1584 597 FunFam Flap endonuclease GEN-like 1 200 258 - -
Glsi01g1584 597 CDD H3TH_XPG-like 203 239 - -
Glsi01g1584 597 CDD PIN_GEN1 2 198 - -
Glsi01g1584 597 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Glsi01g1584 597 SUPERFAMILY Chromo domain-like 384 436 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1584 Glsi-ChrGlsi01 76760414 76768455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1584 1 236 Core DNA Replication Machinery Family AT5G26680 25.194 2.98e-13 70.1