Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1581 ATGGGGCGCCAGCCACTTGATAAGGCAAAACCAAAACACAGAAAGGGGTTATGGTCACCCGATGAAGACAATAAGCTCAGAAACCACATCCTCCATCATGGCCATGGCTGCTGGAGCTCTGTTCCCATTAAAGCAGGTTTGCAGAGGAATGGAAAGAGCTGCAGATTAAGGTGGATCAATTATCTAAGGCCAGGATTAAAGAGAGGGCTGTTCAGCAAACAAGAAGAGGAGACAATTTTGACCCTTCACCACATGTTAGGAAACAAGTGGTCTCAGATAGCACAGCATTTGCCAGGAAGAACTGACAACGAGATAAAAAACCACTGGCATTCATATTTGAAAAAGAAAGTGGCCAAAGCAGAGGAAATGGAATCTCATCATAATAAACAAAAATTGCAGCATGCTAGCTCAAACTCAGATACCTTTGATTCTTCACCCTCTCATCAGAAACCAGCAACTCAAGTTCTTCCAAGTTATGGATATCTGGAAAACATGGAAAAATCAGCAACAAATTCTGATCACTTTATCAAAGAGGCCAGTCAGACCTCCTTACCAAAACTGTTATTTGCTGAGTGGTTTTCACTAGATCATGTCCATGGTGGGAACTCTGCAAATTCAGGTGACTCTATAGTCTTAAGGAATGGAAGCTTTGATCAGTATTCAGATTTCCAAGAAGCTGTGATGCATGGCATATCAGAAGGACCGTATGGTGGAGAGTTTCATAATGGTCTAAGCCAAAATGCAGAAGCTACTGAAGTAGTGTTCAATTCACAGCTCAAGTTTGCAAATCAAATGGTGGAAAATGGGATCATCCATTGTATCCCTGGAGGTAATTTAAGTAGCAGTTTCAGCATGAGCAATGATTTAATGTACATATGA 879 0.4141 MGRQPLDKAKPKHRKGLWSPDEDNKLRNHILHHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGLFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNHWHSYLKKKVAKAEEMESHHNKQKLQHASSNSDTFDSSPSHQKPATQVLPSYGYLENMEKSATNSDHFIKEASQTSLPKLLFAEWFSLDHVHGGNSANSGDSIVLRNGSFDQYSDFQEAVMHGISEGPYGGEFHNGLSQNAEATEVVFNSQLKFANQMVENGIIHCIPGGNLSSSFSMSNDLMYI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1581 292 MobiDBLite consensus disorder prediction 134 153 - -
Glsi01g1581 292 CDD SANT 18 62 IPR001005 -
Glsi01g1581 292 CDD SANT 71 113 IPR001005 -
Glsi01g1581 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Glsi01g1581 292 MobiDBLite consensus disorder prediction 1 22 - -
Glsi01g1581 292 Gene3D - 70 141 - -
Glsi01g1581 292 Gene3D - 15 67 - -
Glsi01g1581 292 SMART sant 14 64 IPR001005 -
Glsi01g1581 292 SMART sant 67 115 IPR001005 -
Glsi01g1581 292 MobiDBLite consensus disorder prediction 117 153 - -
Glsi01g1581 292 MobiDBLite consensus disorder prediction 117 133 - -
Glsi01g1581 292 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Glsi01g1581 292 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Glsi01g1581 292 FunFam MYB transcription factor 70 144 - -
Glsi01g1581 292 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi01g1581 292 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Glsi01g1581 292 PANTHER MYB DOMAIN PROTEIN 55 1 209 - -
Glsi01g1581 292 FunFam MYB transcription factor 12 68 - -
Glsi01g1581 292 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Glsi01g1581 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1581 Glsi-ChrGlsi01 76727159 76729553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1581 8 197 MYB Transcription Factor Family AT3G48920 51.832 4.62e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi01g1581 Myb_DNA-binding 1.3e-10 CL0123