Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1535 ATGGGGGCTTCAACACTTACCGGATTGCTGAATTGGGTCGCGGGCGAATTTCCCTCCCGACGAGCCATCTCCGTTTCAGGCAAGTTCGATCTTACTTACACACGCCTTCTCGAACTGATCGAACGCGCCGCTTCTCGTTTAATCTCCTCTGGAATCAAAGCCGGCGATGTCGTCGCTCTTACTTTCCCCAACACCATCGAGTTCGTCATAATGTTTCTGGCCGTAATTCGAGCACGAGCCACGGCTGCGCCTCTGAACCCAGCATACACGGCCGAGGAGTTCGAGTTTTACTTATCGGACTCGGAATCGAAGCTCCTATTGACGTCACAAGAAGGAAATGCACCGGCTCAAGCCGCGGCTTCGAAGCTCAACATCACTCACGTCACGGCTTCGCTTTCCATAGCCGACGAAACCGAAGTAAGTCTCTCTCTGAATCAGTCCGAGGCATCTGCCAACTCGGTTGCCGAACTCGTCAATGACCCTTCCGACGTAGCCCTATTCCTCCACACTTCCGGCACCACCAGCCGGCCTAAAGGAGTGCCGTTGACTCAGCACAATCTAGCCTCTTCCGTGCAGAACATAAAGTCCGTGTACAAACTCACTGAGGTCGACTCGACCGTGATTGTTTTGCCTCTGTTTCACGTCCACGGACTCATCGCCGGGCTACTGAGTTCACTCGGATCCGGCGCTGCGGTGGCACTGCCGACGGCAGGTCGTTTCTCGGCTTCGACATTTTGGTCAGACATGCTTAACTATAACGCCACGTGGTATACGGCGGTTCCTACCATACATCAGATCATACTGGATCGCCACTTGAACAAGCCAGAACTCGTTTACCCGAATCTCCGGTTTATTCGCAGCTGCAGCGCCTCGCTCGCACCGACTATACTGGCTCGGCTGGAGGAGTCATTCAGAGCTCCAGTTTTGGAGGCGTATGCGATGACCGAAGCGACCCATCTTATGTCGTCGAACCCGTTACCGGAGGATGGGCCTCACAAGCCTGGGTCGGTTGGAAAACCCGTGGGTCAAGAAATGGCGATACTGAATGAGAAGGGTGAAATCCAAAAGGCTGAAATGAAAGGAGAAGTTTGTATAAGGGGTTCAAATGTGACAAAAGGGTACAAAAATAATCCAGAGGTAAACAATGCAGCATTTCAATTCGGTTGGTTTCATACCGGGGATCTTGGGTTTTTCGATTCGGATGGGTATTTGCATCTCGTGGGTCGGATCAAGGAGCTCATTAATCGTGGAGGAGAGAAAATATCACCAATCGAAGTGGATGCAGTCCTATTATCTCATCCGGACATAGCTCAGGCGGTTGCTTTCGGAGTGCCAGATGACAAATATGGCGAAGAGATAAATTGTGCTATCATACCAAGAGAAGGATCAAAAGTTGATGAGGAAGAGGTGCTAAGATTTTGCAAGAAGAATCTTGCATCCTTCAAAGTACCCAAAAAGGTATTCATCACCGATTCATTACCAAAGACTGCCACCGGCAAGATTCTACGACGTCTTGTAGCAGAACACTTCCTTTCTCAAACATGA 1545 0.5055 MGASTLTGLLNWVAGEFPSRRAISVSGKFDLTYTRLLELIERAASRLISSGIKAGDVVALTFPNTIEFVIMFLAVIRARATAAPLNPAYTAEEFEFYLSDSESKLLLTSQEGNAPAQAAASKLNITHVTASLSIADETEVSLSLNQSEASANSVAELVNDPSDVALFLHTSGTTSRPKGVPLTQHNLASSVQNIKSVYKLTEVDSTVIVLPLFHVHGLIAGLLSSLGSGAAVALPTAGRFSASTFWSDMLNYNATWYTAVPTIHQIILDRHLNKPELVYPNLRFIRSCSASLAPTILARLEESFRAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGKPVGQEMAILNEKGEIQKAEMKGEVCIRGSNVTKGYKNNPEVNNAAFQFGWFHTGDLGFFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVAFGVPDDKYGEEINCAIIPREGSKVDEEEVLRFCKKNLASFKVPKKVFITDSLPKTATGKILRRLVAEHFLSQT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1535 514 CDD FACL_fum10p_like 18 508 IPR045310 GO:0016874
Glsi01g1535 514 Pfam AMP-binding enzyme 12 416 IPR000873 -
Glsi01g1535 514 Pfam AMP-binding enzyme C-terminal domain 425 500 IPR025110 -
Glsi01g1535 514 PANTHER ACYL-COA SYNTHETASE 4 513 - -
Glsi01g1535 514 Gene3D - 410 511 IPR045851 -
Glsi01g1535 514 Gene3D - 2 409 IPR042099 -
Glsi01g1535 514 FunFam Peroxisomal-coenzyme A synthetase 5 409 - -
Glsi01g1535 514 ProSitePatterns Putative AMP-binding domain signature. 167 178 IPR020845 -
Glsi01g1535 514 FunFam 4-coumarate--CoA ligase 2 412 513 - -
Glsi01g1535 514 SUPERFAMILY Acetyl-CoA synthetase-like 5 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1535 Glsi-ChrGlsi01 75862629 75868021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1535 4 513 Monolignol Biosynthesis Gene Families AT4G05160 30.697 9.57e-61 207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g1535 01 75862629 75868021 Glsi01g1535 01 75862629 75868021 ECH