Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1524 ATGAACCACGTAAAAATTCACTCAGTTGTTGTAAAGAAAACTAATGAAATTGTAATAAATGGGATTGGTATGGATATTTCCAGTATTCCTATTCCAGTTTGTTCATCCACTGGGACATGTCAGTCGTGTTACAGATGGAGCTCTGGTGGTGTCAATATGCTTGTTGCACAACAGGCATGTCAATGTATCATTGCCCCTGAGGGCTATAACTTCTCTAGTCCAATTGATTTGAAGACTTATTGGGCAAAACATGGCACCAACAAGTTTATCACTATTAGTATTGTTGACAATTCTTTCAAGAGGTTTTTGAAGGCACCATGGAGCAAAGCAATGGAGGGCTATTCTGTTTTAAATAGGAGCCTAGCATTCTCAAAATCTTGCCGTGATGAAGTTATAGAGGATAAGATAGGATCTAGCTCTGCAACACCAGGTCCTCAAAAGTGTAGATGCAATATGGAGATGAAGAGGGTGCTGGATTGTTTGGGTTTGGACAAAGGTTGGGATATGAATACAAGTGAGAAGATGGTGAAGGTTGTAGATTTGAACTTTGATGGCAGGGTTGATTTTGGCGAGTTTGAGTTGATGATGGGATTCTAG 597 0.3987 MNHVKIHSVVVKKTNEIVINGIGMDISSIPIPVCSSTGTCQSCYRWSSGGVNMLVAQQACQCIIAPEGYNFSSPIDLKTYWAKHGTNKFITISIVDNSFKRFLKAPWSKAMEGYSVLNRSLAFSKSCRDEVIEDKIGSSSATPGPQKCRCNMEMKRVLDCLGLDKGWDMNTSEKMVKVVDLNFDGRVDFGEFELMMGF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1524 198 Pfam GAGA binding protein-like family 64 92 IPR010409 -
Glsi01g1524 198 Pfam GAGA binding protein-like family 10 51 IPR010409 -
Glsi01g1524 198 SUPERFAMILY EF-hand 153 196 IPR011992 -
Glsi01g1524 198 PANTHER - 11 51 IPR010409 -
Glsi01g1524 198 SMART GAGA_bind_2 1 93 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1524 Glsi-ChrGlsi01 75534750 75542692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1524 7 92 BBR or BPC Transcription factor family AT1G68120 40.870 1.90e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Glsi01g1524 GAGA_bind 4.2e-14 No_clan