Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1523 ATGGGGGCGGAGCTCTCGTCATTGAATAGGAACAAGGGTCAATGGCAAGAAGCAACTCGGTTGCTCAATGAGATGTTTCTAATAGACATCGAACCCAACGTTTATACCTTTAGTATTTTGGTTGATGCATTTTTTAAAGGAGGAAGGGTGACAGAAGCTCTCGGTGTATTGGCTTGGATGATGAAGTGTGGTCAGAAGCCTGATGTTATTACTTACAGTGCTTTAATGGACGGGTATTGTTTGAGCAATAATGTCACAGAGTCAAAAGAAGTATTCAATAGGATGGTCAAAAGTGGTTTGGCACCTAATGTTATAAGCTATACTATCTTGATTAATGGATACTGTAAGATTAATATGTTGGATAAAGCCATGGATCTCTTTCAAGAAATGATTTGCAAAAGTTTGGTTCCCGATATTGTAACTTACAGCTCTCTTATCGATGGGTTGTGCAAATCAGAGAGAATGTCAGATGTGCAGGATCTTGTTTATAAAATGTATGATTGTGGTCAACCGCCCAATATAATCACTTACAGTACCTTGTTAGATGCATTTTGTAAGAGCCAGCGTCTTGACCAAGCAATTGCATTATTTAAGCAAATTGTTGACCGAAAAATTCATCCTGATGCGTGCACATACGCTATACTTATTGATGGTTTGTGCAAAGGTGGAAGACTAAATACTGCAGTAGAGATATTTCAGCATCTTTTGGTCAAAGGCCATCGTCTAAACGTCCAAGCATATACTGCTATGATCAATGGACTTTGTAAAAAGGGCTTGTTTGATGAAGCAACAGCCCTGTTTTATAAAATGGAAGAGAATGGCTGCCTCCCTAATTTCGTAACATTTGAAACTATTATTGGAGATCTTCTGGAAAAAAATGAGAATAAGAAGGCAGAGAAATTTCTTAATGAAATGATCGCTAGAGATGTTGTAAAGAAAACTACTGAAATTGTAATAAATGGGATTGATGTGGATATTTCCAGTTTGTTGATGGCTTCTTGCACTGGGCACCTCAACTTTGTTACTGATGAGGCTCTGGTGGGTGGCAATCTCCTTGTTGCACAAACAGGCATGTCAATGTATCCATTGCCTATGAGTACCAAGCAATGTGGTGCTAGGATAGCTGGCAGAAAAATGAGTGTAGGAGCATTGAAGAAAGTCTTAGAGAAACTTGCAGTGGAGGGTTTTTACTTCTCCAGGTCCAATTGA 1209 0.3896 MGAELSSLNRNKGQWQEATRLLNEMFLIDIEPNVYTFSILVDAFFKGGRVTEALGVLAWMMKCGQKPDVITYSALMDGYCLSNNVTESKEVFNRMVKSGLAPNVISYTILINGYCKINMLDKAMDLFQEMICKSLVPDIVTYSSLIDGLCKSERMSDVQDLVYKMYDCGQPPNIITYSTLLDAFCKSQRLDQAIALFKQIVDRKIHPDACTYAILIDGLCKGGRLNTAVEIFQHLLVKGHRLNVQAYTAMINGLCKKGLFDEATALFYKMEENGCLPNFVTFETIIGDLLEKNENKKAEKFLNEMIARDVVKKTTEIVINGIDVDISSLLMASCTGHLNFVTDEALVGGNLLVAQTGMSMYPLPMSTKQCGARIAGRKMSVGALKKVLEKLAVEGFYFSRSN 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1523 402 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Glsi01g1523 402 Gene3D Tetratricopeptide repeat domain 85 186 IPR011990 GO:0005515
Glsi01g1523 402 Gene3D Tetratricopeptide repeat domain 187 311 IPR011990 GO:0005515
Glsi01g1523 402 Gene3D Tetratricopeptide repeat domain 5 84 IPR011990 GO:0005515
Glsi01g1523 402 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Glsi01g1523 402 SUPERFAMILY TPR-like 6 142 IPR011990 GO:0005515
Glsi01g1523 402 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Glsi01g1523 402 NCBIfam pentatricopeptide repeat 35 69 IPR002885 -
Glsi01g1523 402 NCBIfam pentatricopeptide repeat 105 139 IPR002885 -
Glsi01g1523 402 NCBIfam pentatricopeptide repeat 70 104 IPR002885 -
Glsi01g1523 402 NCBIfam pentatricopeptide repeat 140 173 IPR002885 -
Glsi01g1523 402 NCBIfam pentatricopeptide repeat 246 278 IPR002885 -
Glsi01g1523 402 NCBIfam pentatricopeptide repeat 175 209 IPR002885 -
Glsi01g1523 402 NCBIfam pentatricopeptide repeat 210 243 IPR002885 -
Glsi01g1523 402 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Glsi01g1523 402 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 33 67 IPR002885 -
Glsi01g1523 402 Pfam PPR repeat 64 96 IPR002885 -
Glsi01g1523 402 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Glsi01g1523 402 Pfam PPR repeat family 102 151 IPR002885 -
Glsi01g1523 402 Pfam PPR repeat family 11 46 IPR002885 -
Glsi01g1523 402 Pfam PPR repeat family 243 287 IPR002885 -
Glsi01g1523 402 Pfam PPR repeat family 172 221 IPR002885 -
Glsi01g1523 402 Pfam GAGA binding protein-like family 296 399 IPR010409 -
Glsi01g1523 402 SMART GAGA_bind_2 217 400 IPR010409 -
Glsi01g1523 402 SUPERFAMILY HCP-like 110 274 - -
Glsi01g1523 402 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Glsi01g1523 402 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 13 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1523 Glsi-ChrGlsi01 75513257 75515643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1523 91 331 Glycosyltransferase AT1G05670 30.924 1.53e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Glsi01g1523 GAGA_bind 3.3e-22 No_clan