Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1520 ATGTCCGAATCCGAGGAAGAAAACCCTGACTTTCGTCCCAAGTCAAAGCCGACGGAGGAACCTGGGTGTGTCATGGATTTCGATCTCGACCTGGAAAGTTCTTGGCCCTTAAATCAGATATCTTTCGTCTCCAACCCCATGTCCCCTTTTCTTATCTCGGCTTCCTCCGAGCAACCTTCTTCTCCTCTATGGGTTTTTTCAGACGTAGATGATGACAGGCACGCCAAACTTGCTGCTTCAGCCTTCTCCGATTGCCATCGATTGTTCTCCTGCAATTCAAATTCAGTAGCTGAAAAGCCAGTGGAAAATGATGAGAACAAAAAGGTTTTGTCACGCCCTGTGGCTCTGACACCATTAGAAAATCCAGATGCGTATTGTTTGATCAAGGAAAGGATGACACAAGCACTACGGTACTTCAAAGAGTTGACGGAACAGAATCTTCTGGCTCAGGTTTGGGCACCCGTGAGGATTGGGAACCAGTATGTGCTTACAACTTCAGGGCAACCCTTTGTTCTTGATCCACGTAGTAATGGACTTTATCAGTATAGAACAGTCTCTCTGATGTACATGTTTCCTGTGGATGGAGAGAATGATGGACTCCTGGGACTTCCTGGCCGTGTTTTTCAGCAGAAGCTACCTGAATGGACTCCCAATGTTCAATATTATTCAAGTAGAGAGTATCCACGCCGAAATCATGCTAAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTTGGGGCAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGACGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAAGAGTTCAGAAATTTTGGAACATCCATACACACAGATTTGTAATGAAAGCCGCCAGAATGCATTAGCAGAGATTTTGGAGATATTGACAGTGGTGTGTGAAACTCATAAATTACCTCTGGCCCAAACATGGGTTCCCTGTAGGCATCGGAGTGTTCTGGCCCATGGTGGTGGCCTGAAGAAGATTTGCTCTAGCTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGATGTAGCATTCTATGTCATAGATGCTCATATGTGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAAGGCATTTTTGTCGAGCAATATGTGCTTCTGTGGAAACATTACCCAGTTCAGCAAAATTGAGTACCCCTTAGTCCATTATGCTCTCATGTTTGAGTTAACCAGCTCTTTTGCAATCTGTTTACAAAGCTCTCATACTGGAAATGATGATTATATATTAGAGTTTTTTCTGCCTCCTCAGGTCACAGACTTTAAAGAACAAAAGACTTTGTTGGGATCTATATTGGCAACAATAAAACAGCATTTCCATAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGGAGGAAGGTTCAATAGAAATCATTGAAGCAACAAATGAAAGAGTTTATTCAAGGATTGAATCTATCCCAATTACCCAACCTACTAAATCGCCACCTGGACCTGATGCCTCACCAGATATGGGGGAGATGGCACCACTGGATCCATCAGAGCAGCAAGTGGTGATGTACTTTGATGGTATAACTGGTGGAGGTAGTCTTGGTGATAATGCAGCTGGAAGCCTTGATCGGATCTCTTCCTTAGAGACTAATAACATAAAGAAACCCTCAGAGAGAAAACGAGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTGCAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGTATCTGTAGGCAGCATGGGATATCTCGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGCTCCCTATCCAAACTCAAGCGGGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCGTTTGGTTTGAATTCTCTAAGCACAAGTCCACTTCCTGTTGCTGTTGGTTCCATTCCTGAGCCTGCTACCTCAAACAAGTTCAGCCAACACGCTTCATTAAGTACTCATCTGTCAGAAACTCAGATGAAAGAGAATGAATTGGTTGCCTCCAAAGTATTGGAAACAAATAGACAGGCTACGATGGAACATCAATTGCTTGGAGGAAGGATCCAAAGTCATGACAAAAGTGGTTCCAGTCAGGAGTTCGGTGAAGGAGCAAACAGGTCTAGAACAGGGAGTGGCTCAAGTGAAGATAGTGCAAATCCTACATCTCATGGCTCATGCCATGGTAGTCCCCCAAATGAAAGTTCACCTGCAAAAGATATATTTATTATACCCAACAATGAGAATGAACAATGTGTTGCAGTAGGGGGATCGCCCGAGTTGACACTTCAGCCTACTAGTAAACTGAATGGTCAAACTGCATACGCCATGCTTGATCTCTTGGCAGCAGAACTTCAAGAACCATTTGGAGGAATGCTTATTGAGGATGCAGGTAGTTCCAAAGATCTGAGAAATCTGTGTCCTTCTGCAGCTGATGCCATTATGGAGGATCAGGTTCCAGAAGCTTGTGGTACTAATCCTCCATGTTCTAATTTGGTTCCCAAGCAATGCATGAATACTCTTGGTGACACAACAACACGGTTCGTATCTCCCAGAGAAATGAAGAATATGACTATAAAAGCAACATATAGAGAAGATATCATACGGTTTCGGATCTCTTTGAGTTGTGGCATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGACTAAAACTAGAGGTGGGCACATTTGATATCAAGTACCTGGACGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACTTGCAGGAGTGCCTGGATATCTCAAGATCATCCGGTGGCAACATAATCAGGCTTTTGGTGCACGACACAGGATCCAATCTTGGAAGCTCTTGTGAGAGCTCAGGAGAGTGA 2967 0.4378 MSESEEENPDFRPKSKPTEEPGCVMDFDLDLESSWPLNQISFVSNPMSPFLISASSEQPSSPLWVFSDVDDDRHAKLAASAFSDCHRLFSCNSNSVAEKPVENDENKKVLSRPVALTPLENPDAYCLIKERMTQALRYFKELTEQNLLAQVWAPVRIGNQYVLTTSGQPFVLDPRSNGLYQYRTVSLMYMFPVDGENDGLLGLPGRVFQQKLPEWTPNVQYYSSREYPRRNHAKHYNVRGTLALPVFEPLGQSCVGVLELIMTSQKINYAPDVDKVCKALEAVNLKSSEILEHPYTQICNESRQNALAEILEILTVVCETHKLPLAQTWVPCRHRSVLAHGGGLKKICSSFDGSCMGQVCMSTTDVAFYVIDAHMWGFREACVEHHLQQGQGVAGKAFLSSNMCFCGNITQFSKIEYPLVHYALMFELTSSFAICLQSSHTGNDDYILEFFLPPQVTDFKEQKTLLGSILATIKQHFHSLKIAAGVELEEEGSIEIIEATNERVYSRIESIPITQPTKSPPGPDASPDMGEMAPLDPSEQQVVMYFDGITGGGSLGDNAAGSLDRISSLETNNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSPLPVAVGSIPEPATSNKFSQHASLSTHLSETQMKENELVASKVLETNRQATMEHQLLGGRIQSHDKSGSSQEFGEGANRSRTGSGSSEDSANPTSHGSCHGSPPNESSPAKDIFIIPNNENEQCVAVGGSPELTLQPTSKLNGQTAYAMLDLLAAELQEPFGGMLIEDAGSSKDLRNLCPSAADAIMEDQVPEACGTNPPCSNLVPKQCMNTLGDTTTRFVSPREMKNMTIKATYREDIIRFRISLSCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECLDISRSSGGNIIRLLVHDTGSNLGSSCESSGE 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1520 988 MobiDBLite consensus disorder prediction 512 531 - -
Glsi01g1520 988 FunFam RWP-RK domain-containing protein 890 974 - -
Glsi01g1520 988 Pfam PB1 domain 894 974 IPR000270 GO:0005515
Glsi01g1520 988 MobiDBLite consensus disorder prediction 1 22 - -
Glsi01g1520 988 Pfam RWP-RK domain 588 636 IPR003035 -
Glsi01g1520 988 PANTHER PROTEIN NLP8 55 987 IPR045012 GO:0003700
Glsi01g1520 988 Gene3D - 890 974 - -
Glsi01g1520 988 ProSiteProfiles RWP-RK domain profile. 575 656 IPR003035 -
Glsi01g1520 988 SUPERFAMILY CAD & PB1 domains 891 978 - -
Glsi01g1520 988 MobiDBLite consensus disorder prediction 722 777 - -
Glsi01g1520 988 CDD PB1_NLP 894 974 IPR034891 -
Glsi01g1520 988 MobiDBLite consensus disorder prediction 727 770 - -
Glsi01g1520 988 SMART PB1_new 893 975 IPR000270 GO:0005515
Glsi01g1520 988 ProSiteProfiles PB1 domain profile. 893 975 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1520 Glsi-ChrGlsi01 75446667 75451128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1520 262 988 NLP Transcription Factor Family AT4G24020 54.533 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Glsi01g1520 PB1 5.8e-19 CL0072