Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1438 ATGAAAATGTCCTCATTTGGCATGGTCGCTTTGAGGTTGTCTTGGAACCTTAGCTTAAAACCACATGCGGTTGTCGTTTCTCAAGCTTTACTTCAACTCATTTCACCCAATCTAAGATTGAAGCTACCCTTAAAACCTCTCGGGTCAATCGTCTTCTCAATTTTCTTCTCGCCTATCGGAGTCTCTCTGGTTCTCCTTCTAGACTCTTCCACTGCTTCCCCCTCTCACTCTCTCAACGCTTGCTCTCCCATGGCTTCCGATCTAGAAGTCAAAGCCAAAGAGGCCTTCGTCGATGACCACTACGAGCTCGCCGCAGACCTCCTCACTCAAGCTATTGCTCTCAACCCTAAGAACGCCGAGCTCTATGCGGACCGTGCCCAGGCTAACATCAAACTCTGCAACTACACTGAGGCTGTTGCTGATGCAAACAAGGCAATTGAGTTGAATCCTGAATCATCAAAAGCATATTTGCGCAAAGGTACTGCATGCATGAGGCTTGAGGAATATCAGACTGCCAAGGCAGCTCTGCAGAAGGGTGCTTCATTGGCTCCAGAAGAGTCAAGATTCGTTGATTTGATAAAAAAATGTGATGAGCTCATTGCTGAGGAAACTTGTACCGTACCTATACAGGAAGAGGTCGTCACACAGGATCTATCTTCAAAATATGTTGAGCAAGAGAATGATCCTCCAAAGCAGGTGGCAGTATCAGCAGCTAAACCTAAATACAGGCATGAATTTTACCAGAAGCCTGATGAGGTGGTTGTAACCATATTTGCCAAGGGCATCCCACGGGATAGAGTTACTGTTGACTTTGGTGAACAAATACTAAGTGTTTGCATTAATGCCCCTGGTGAAGATGGATATACTTTCCAACGTCGCTTATTTGGAAAGATAATACCTGCGAGATGCAGATATGAAGTTTTGTCTACCAAAATTGAAATTCGCCTTGCAAAATCAGAATCTATTCACTGGACATCTCTGGAATTCACTGGGGAGGTCGCAGTTCAACAAAAAGTTGATGTTTCCTCAGTTGCTGGAAGTCAAAGACCTACTTACCCATCTTCTAAACCAACAAGAGTAGATTGGGACAAGCTTGAAGCGCAAGTTAAGAAAGAGGAGAAGGAAGAAAAGCTTGATGGTGATGCAGCATTGAACAAATTTTTCCGTGAAATATACCAGGATGCAGACGAGGACACAAGAAGAGCAATGAGAAAATCCTTTGTGGAGTCTAATGGAACAGTACTGTCTACCAACTGGAAAGAAGTGGGATCAAAGAAGGTAGAGGGAAGTCCTCCTGATGGCATGGAGTTGAAAAAATGGGAATATTAA 1329 0.4409 MKMSSFGMVALRLSWNLSLKPHAVVVSQALLQLISPNLRLKLPLKPLGSIVFSIFFSPIGVSLVLLLDSSTASPSHSLNACSPMASDLEVKAKEAFVDDHYELAADLLTQAIALNPKNAELYADRAQANIKLCNYTEAVADANKAIELNPESSKAYLRKGTACMRLEEYQTAKAALQKGASLAPEESRFVDLIKKCDELIAEETCTVPIQEEVVTQDLSSKYVEQENDPPKQVAVSAAKPKYRHEFYQKPDEVVVTIFAKGIPRDRVTVDFGEQILSVCINAPGEDGYTFQRRLFGKIIPARCRYEVLSTKIEIRLAKSESIHWTSLEFTGEVAVQQKVDVSSVAGSQRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRRAMRKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEY 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1438 442 Gene3D - 234 344 IPR008978 -
Glsi01g1438 442 SUPERFAMILY TPR-like 88 191 IPR011990 GO:0005515
Glsi01g1438 442 SMART tpr_5 153 186 IPR019734 GO:0005515
Glsi01g1438 442 SMART tpr_5 119 152 IPR019734 GO:0005515
Glsi01g1438 442 SMART tpr_5 85 118 IPR019734 GO:0005515
Glsi01g1438 442 Pfam SGS domain 361 440 IPR007699 -
Glsi01g1438 442 ProSiteProfiles TPR repeat profile. 153 186 IPR019734 GO:0005515
Glsi01g1438 442 FunFam Protein SGT1 homolog 84 214 - -
Glsi01g1438 442 Pfam CS domain 243 318 IPR007052 -
Glsi01g1438 442 Gene3D Tetratricopeptide repeat domain 70 206 IPR011990 GO:0005515
Glsi01g1438 442 PANTHER PROTEIN SGT1 HOMOLOG 84 440 IPR044563 GO:0051087
Glsi01g1438 442 CDD p23_CS_SGT1_like 245 328 - -
Glsi01g1438 442 ProSiteProfiles SGS domain profile. 351 442 IPR007699 -
Glsi01g1438 442 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Glsi01g1438 442 SUPERFAMILY HSP20-like chaperones 238 334 IPR008978 -
Glsi01g1438 442 FunFam Protein SGT1 homolog A 237 340 - -
Glsi01g1438 442 Pfam Tetratricopeptide repeat 154 185 IPR019734 GO:0005515
Glsi01g1438 442 ProSiteProfiles CS domain profile. 239 328 IPR007052 -
Glsi01g1438 442 Pfam Tetratricopeptide repeat 119 151 IPR013105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1438 Glsi-ChrGlsi01 73438901 73446105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1438 82 183 U-box Gene Family AT3G07370 30.392 8.59e-07 48.5