Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1409 ATGGCGTATGAGACTATGCAACAAAAGGATATCAATTTCAAGCCCAAACTTCATGATATTTTGAATCACGCCCCAACAGGATCTGTGGCTTTCAATTTAGCAGAAGTTGTAGTTCTTGATGGAACATCAAATGGTTGGGATTTAGAAGAAGCAAAAACTAAAAGAGCCGAGGAGGCCTCGACCTCGGAGCAAAATCCATCACACACCTTGCCCTCGTCAGCTCTGAAAATTACGCCTATACCCGCACCAGACCCAGACCCATTAGGGATAACTCTGACTTCATCCAGACAGGAGGGCCACCTGGAGCCGGCCCACGACAGAGAACTATCTCTTAAGAAAGCTTTAGATATTCTATCCTTCCCAGGAGCAATTTTATTGCTCTTATGCACATACAGGGAATATAAGCATGAAGAAACTGACAGGGAAACCGACGAAAGCCTTCATACCCCGTTGAATTGCGAATCCAGTGATATTGATTCTACTAGCTACGTAGACACATTTGCCAAAGCTGGATTATTCAGTAGGATGTCATTTTGGTGGTTGAATCCATTGATGAAAAGGGGCAAAGAGAAAACACTTCAGGATGAAGATATTCCAAAGTTGCCAGAGGATGTTCAAGCAAAAAGATGTTATTTGGAATTTATAGACCATTTAAACAAACAGAAACAGAAAGAACTATCATCACAGCCATTGTATTTGAAGACAATAATTTTGTGCCACTGGAGAGAGATTTTGATATCTGGGTCCTTTGCATTGCTAAAGGTACTCACTCTCTCTGTTGGTCCTCTACTTCTGAATGCCTTTATATTGGTTGCTGAGGGTAAAGAGAGTTTCAAACATGAAGGTTATGTATTGACCATATCACTTTTCTTTATAAAGCTCATAGAATCCCTATCACAAAGGCAATGGTACTTCCGTAGCAGAGTCATTGGTCTGAAAGTTAGGTCTTCGCTCACGGCAGCCATTTATGAAAAGCAGCTGAGGCTGTCCAATGCTTCTAGGTTGGTGCATTCTAGTGGGGAGATAATGAACTATGTAAACCTAGATGCCTATAGAATTGGAGAATTCCCATATTGGTTTCACCAGACTTGGGCAACAGGTTTCCAAATATGTTTTGCATTAGTGATTCTTTTTCATGCTGTTGGGGTAGCAACAATTGTCTCCCTGGTGGTGATTGTTCTTATTGTGCTTTGCAATGCTCCACTCGCTAAGTTACAGAACAAGTTTCAGAGCAAACTCGTGGTAGCACAAGATGACAGATTGAAGGCTACCTCTGAGGCTCTCGTGAATATGAAGGTGTTGAAGTTGTATGCGTGGGAAACCAATTTTAAGAAAGCTATAGAAAGCTTAAGGAAGGTGGAGTTGAAATGGTTATCTGCAGTGCAGTCACTAAGGGCGTACAACAACTTCCTCTTCTGGTCTTCTCCTGTTTTAGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTCCTCAAGGTACCTTTACATGCAAATAACGTTTTCACCTATATAGCAACAATACGTATGCTACAAAATCCAATCAGCGCCATCCCTGATGTTATTGCGGTGGTCATTCAAGCAAAAGTTGCCTTTTCACGGATTGTTAAACTCCTTGAGGCTCCAGAGCTGCAGGGTGCATATGTTAGGAAGAGATGCTTTAATGACAGTCTCAATGGCTCAATTTTAGTCAAGTCTGCTAACTTTTCATGGGAAGATGAGATATCAAAGTCAAAACTCAGAAACATAAATTTAGAGGTTAGATCTGGGCAAAAGGTGGCTATTTGCGGAGGAGTTGGCTCAGGCAAATCAACCCTTTTAGTAGCCATTTTGGGAGAAGTTCCTAATACTCAGGGAACCATTAAAGTTCATGGGAAGTTTGCATATGTTTCTCAAGCACCATGGATACAGACAGGTACAATACGAGAGAATATATTATTTGGATCAGCTATGGATGTTCAAAGATATCAAGAAACACTTCATAGTTCTTCATTAGTTAAGGACCTTGACATGTTTCCCCATGGTGATCTCACTGAGATAGGAGAGAGAGGAGTTAACCTGAGTGGAGGTCAGAAGCAGCGAGTTCAACTTGCTCGTGCTCTGTATCAAAATGCTGATGTATATCTCTTGGATGATCCGTTCAGTGCTGTGGATGCACATACTGCCACAAATTTGTTCAATGAGTATGTTATGAAAGGACTACAAGGGAAGACAGTGTTACTCGTAACTCATCAAGTTGACTTCCTTCCAGCTTTTGATTTTGTTTTGTTGATGTCAGATGGAGAAATTCTGCAATCAGCTCCTTATCACCATCTGTTGACCTCAAGCAAAGAATTTCAGGACCTTGTTAATGCTCATAAGGAGACTGCTGGTTCTGACAGGCTTGTGACTGTTACTTCTTCTAGGAGAAATGCAAATTCTGCTGGAGAGATTAAAAAATCCTACGTAGAGAAGCAGTCTGCAGAATCAAAAAGTGATCAATTAATTAAGGAAGAAGAGAGAGAAAAAGGAGACACAGGGTTTAAGCCTTACTTACAGTATCTGAAGCCAAACAGAGGTTATATATACTTCTTTGTGGCTGCTCTTACTCACCTTATCTTTGTGGTGGGTCAGATATTGCAGAACTCATGGATGGCTGCTAATGTAGACAATCCCCTTATTGGCAAATGGCGATTGATTGTAGTGTACCTGTTGATTGGAGTTATCTCAACTTTTTTTTTGTTGATCAGATGTTTGGCAGCGGTAACTTTGGGTCTTCAATCATCAAAATCTTTATTTTCACTGCTACTGAACTCTCTTTTTCGAGCACCAATGTCTTTTTATGATTCCACACCTTTGGGAAGGATACTTAGTAGGGTCTCATCAGATCTCAGCATTATGGATCTCGATATACCATTTGGCTTTTTTTTTGCTGTTGGATCTTCTATAGTTTTTTATACTAGTCTTGCAGTTTTGGCAGTTGTTACCTGGCAAGTACTTTTTATCTCAATTCCCATGGTCTTTATTGCAATTAACTTTCAGAGATACTACTTAGCTTCTGCAAAAGAACTTATGCGGATGAATGGCACAACAAGATCCTTTGTAGCTAATCATCTAGCTGAATCTGTAGCTGGAGCTGTGACAATAAGGGCTTTTGATGAGCAAGATCGTTTTTTCGCTAAGAATCTTGATCTAATTGATGTAAATGGCAGTCCTTTATTCCTTAGTTTTGCAGCAAATGAATGGTTCCAGCTGAGGCTAGAAACAATCAGTGCTGTTGTTCTTGCCTCCGCGGCACTTTGCATGGTTGTGCTTCCACCTGGGACTTTCACCTCCGGTTTTGTTGGAATGGCCCTTTCTTATGGCCTTTCATTAAACGCAGTGCTTGTGTTCTCAATTCAATATCAATGCTCTCTGTCAAACCATATAATATCAGTAGAGCGGCTAAATCAATATATGCATATACCATGTGAGGCCCCTGAGGTAATAGAAGGAAATCGTCCTCCACTGAATTGGCCAATTGTGGGCAAAGTAGAAATACTTAATTTGCAGATACGATACAGGGATGGGGCACCACTTGTACTGCGTGGGATCACATGCACATTTGAAGGAGGGCACAAGATTGGTATTGTTGGCAGGACAGGAAGTGGGAAGTCCACTCTGATAGGTGCTTTATTCCGTCTAGTGGAGCCAGCAGGAGGAAAAATCATAGTTGATGGAATAGACATTTCTTCCATTGGACTTCATGATTTGAGGTCACGTTTTGGTATTATACCTCAAGATCCTACTCTTTTTAATGGGACAGTCAGATATAATTTGGACCCTTTATCTCAACATTCTGATCAAGAAATATGGGAGGTACTTGGGAAGTGTCAGTTACTAGAGGCTGTCCGAGAGAAAGAAGAGGGCTTAGACTCCTCAGTTGTGGAAGATGGGTCAAATTGGAGTATGGGGCAACGCCAGCTATTCTGTTTGGGGCGTGCTCTTTTGAAGAGAAGTCAGATATTGGTACTCGATGAAGCAACTGCGTCAATCGATAATGCAACTGATTTGATTCTGCAGAAAACCATTAGAACAGAGTTTGCAGATTGTACTGTAATCACAGTAGCCCACAGGATACCAACTGTGATGGATTGCACTATGGTTCTTGCCCTCAGTGATGGAAAGCTAGTGGAATATGATGAGCCGATGAACCTGATGAAGGAAGAAGGATCACTGTTTCGAAAGCTTGTGAAGGAATACTGGTCTCATTTTCAATCAGCAGAATCACATTGA 4248 0.4127 MAYETMQQKDINFKPKLHDILNHAPTGSVAFNLAEVVVLDGTSNGWDLEEAKTKRAEEASTSEQNPSHTLPSSALKITPIPAPDPDPLGITLTSSRQEGHLEPAHDRELSLKKALDILSFPGAILLLLCTYREYKHEETDRETDESLHTPLNCESSDIDSTSYVDTFAKAGLFSRMSFWWLNPLMKRGKEKTLQDEDIPKLPEDVQAKRCYLEFIDHLNKQKQKELSSQPLYLKTIILCHWREILISGSFALLKVLTLSVGPLLLNAFILVAEGKESFKHEGYVLTISLFFIKLIESLSQRQWYFRSRVIGLKVRSSLTAAIYEKQLRLSNASRLVHSSGEIMNYVNLDAYRIGEFPYWFHQTWATGFQICFALVILFHAVGVATIVSLVVIVLIVLCNAPLAKLQNKFQSKLVVAQDDRLKATSEALVNMKVLKLYAWETNFKKAIESLRKVELKWLSAVQSLRAYNNFLFWSSPVLVSAASFGACYFLKVPLHANNVFTYIATIRMLQNPISAIPDVIAVVIQAKVAFSRIVKLLEAPELQGAYVRKRCFNDSLNGSILVKSANFSWEDEISKSKLRNINLEVRSGQKVAICGGVGSGKSTLLVAILGEVPNTQGTIKVHGKFAYVSQAPWIQTGTIRENILFGSAMDVQRYQETLHSSSLVKDLDMFPHGDLTEIGERGVNLSGGQKQRVQLARALYQNADVYLLDDPFSAVDAHTATNLFNEYVMKGLQGKTVLLVTHQVDFLPAFDFVLLMSDGEILQSAPYHHLLTSSKEFQDLVNAHKETAGSDRLVTVTSSRRNANSAGEIKKSYVEKQSAESKSDQLIKEEEREKGDTGFKPYLQYLKPNRGYIYFFVAALTHLIFVVGQILQNSWMAANVDNPLIGKWRLIVVYLLIGVISTFFLLIRCLAAVTLGLQSSKSLFSLLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIMDLDIPFGFFFAVGSSIVFYTSLAVLAVVTWQVLFISIPMVFIAINFQRYYLASAKELMRMNGTTRSFVANHLAESVAGAVTIRAFDEQDRFFAKNLDLIDVNGSPLFLSFAANEWFQLRLETISAVVLASAALCMVVLPPGTFTSGFVGMALSYGLSLNAVLVFSIQYQCSLSNHIISVERLNQYMHIPCEAPEVIEGNRPPLNWPIVGKVEILNLQIRYRDGAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGKIIVDGIDISSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLLEAVREKEEGLDSSVVEDGSNWSMGQRQLFCLGRALLKRSQILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLALSDGKLVEYDEPMNLMKEEGSLFRKLVKEYWSHFQSAESH 1415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1409 1415 CDD ABC_6TM_ABCC_D2 851 1144 IPR044726 GO:0140359
Glsi01g1409 1415 FunFam ABC transporter C family member 5 818 1150 - -
Glsi01g1409 1415 Pfam ABC transporter transmembrane region 853 1093 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g1409 1415 Pfam ABC transporter transmembrane region 245 512 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g1409 1415 SUPERFAMILY ABC transporter transmembrane region 840 1149 IPR036640 GO:0005524|GO:0016020
Glsi01g1409 1415 Gene3D - 542 804 IPR027417 -
Glsi01g1409 1415 MobiDBLite consensus disorder prediction 51 80 - -
Glsi01g1409 1415 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 245 525 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g1409 1415 Gene3D ABC transporter type 1, transmembrane domain 817 1150 IPR036640 GO:0005524|GO:0016020
Glsi01g1409 1415 CDD ABCC_MRP_domain1 560 760 - -
Glsi01g1409 1415 SMART AAA_5 587 760 IPR003593 GO:0016887
Glsi01g1409 1415 SMART AAA_5 1195 1378 IPR003593 GO:0016887
Glsi01g1409 1415 FunFam ABC transporter C family member 10 542 796 - -
Glsi01g1409 1415 CDD ABCC_MRP_domain2 1167 1387 - -
Glsi01g1409 1415 FunFam ABC transporter C family member 3 1152 1404 - -
Glsi01g1409 1415 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 863 1132 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g1409 1415 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1169 1403 IPR003439 GO:0005524
Glsi01g1409 1415 CDD ABC_6TM_ABCC_D1 246 533 IPR044746 GO:0140359
Glsi01g1409 1415 Pfam ABC transporter 578 712 IPR003439 GO:0005524
Glsi01g1409 1415 Pfam ABC transporter 1186 1334 IPR003439 GO:0005524
Glsi01g1409 1415 Gene3D - 1153 1404 IPR027417 -
Glsi01g1409 1415 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 168 1403 - -
Glsi01g1409 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1159 1402 IPR027417 -
Glsi01g1409 1415 FunFam ABC transporter C family member 10 228 541 - -
Glsi01g1409 1415 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 562 783 IPR003439 GO:0005524
Glsi01g1409 1415 SUPERFAMILY ABC transporter transmembrane region 233 538 IPR036640 GO:0005524|GO:0016020
Glsi01g1409 1415 Gene3D ABC transporter type 1, transmembrane domain 233 541 IPR036640 GO:0005524|GO:0016020
Glsi01g1409 1415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 783 IPR027417 -
Glsi01g1409 1415 ProSitePatterns ABC transporters family signature. 685 699 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1409 Glsi-ChrGlsi01 72212372 72223940 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1409 352 823 Calmodulin-binding Proteins AT2G36910 24.660 2.53e-24 109