Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1399 ATGAAAGCCGTAAACCCATTTGCCGAAGCTGGATTCTTTGGTAGGATGTATTTTTGGTGGTTGAATCCATTGATGCAAAGGGGTAAAGAGAAAATACTTCAGGATGAAGATATCCCAAAGTTGCTGGAAGATCAAGCAGAAAGTGCTCACTCTCTCTTTGTCCTCTACTCTGAATTCTTTTATAACCTAGTGGGAAAAGGTTTAGTTGTTGTTGTTGTTGTAGGGTTGATGCATTCTAGCGGGGAGATTGTGAACTACGTGACTGTAGATGCCTATAGAATTGGAGAATTCCCATTTTGGTTTCGTCAGACTTGGACAAGTGTCCAACTATGTTTTGCATTAGTGATTCTTATTCGTGCTGTTGAGGTAGCAATAATTGCCTCCCTGGGTGTGATTGTTCTTACTGTGCTTTGCAATGCTCCACTAGCTAAGTTACAAAACAAGTTTCAGAGCAAACTTATGGCTGCACAAGATGGCAGATTGAAGGTTACTTCTGAGGCTCTCGTACCATTACATGCAAATAATGCTTGCACGTTTGTACCAACTTTACGTAAACTTCAAGATCCAATCAGAGGCATACCATATGCTATTGCGGTGGTCATTCAAGCAAAAGTTGCCTTTGCACGGATTGTTAAATTCCTTGAGGCTCCTGAACTACAGAGTGCAAATGTCAGGAAGAGATGCTTTAATGACGGTCTCAATGGCTCAATTTTAGTCAAGTCTGCTAATTTCTCATGGGAAGATGAGATATCAAAGTCAACACTCAGAAACATAAATTTAGAGGTTAGACCTGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGGTTAGGAAAATCAACCCTCTTAGCAGCAAGTCTGGGAGAAGGTCCTAATACTCAGGGAACCGTACAATACGAGAGAATATATTTATTTGGATCAGCTATGGATGTTCAAAGATATCAGGAAACACTTCGTAGTTCTTCATTAGTAAAGGACCTTGAATTATTTCCCCATGCTGATCTCACTGAAATAGGGGAAAGAGGAATTAACCTGAGTGGAAGTCAGAAGCAGCGAGTTCAACTTGCTCGTGTTCCTTATAAGAATGCTGAAGTATATCTCTTGGACGATCCATTCAGTGCTGTTGAGGCACATACTGCCTCAAATTTGTTTAATGATTATGTTATGAAAGGACTAAATGGGAAGACAGTTTTACTCGTGACTCACCAAGTTGACTTCCTTCCAGCGTTTGATTCTGTTTTGATACTGCAGAACTCACGGATGGCTGCTAATGTGGATAATCCCCTTGTCAGCAAATCGCCATTGATTGTAGTGTATATGTTGATTGGAGTAATTTCAACAATTCTCTTATTGACCAGAAGTTTTGCTGCAGTTGCTTTCGGTCTTCAATCGTCAAAATCTTTATTTTCACAGCTACACATCTCCCTTTTCTTGCACCCACGTCTCATCAGATCTCAGCATTGTCGATCTCAATATACCCTTTTTACTTATTTTGCAGTTGGAGCTTCTATAAATTGTTATGCTGATCTATTACCTCAGAAATCTTGA 1545 0.4013 MKAVNPFAEAGFFGRMYFWWLNPLMQRGKEKILQDEDIPKLLEDQAESAHSLFVLYSEFFYNLVGKGLVVVVVVGLMHSSGEIVNYVTVDAYRIGEFPFWFRQTWTSVQLCFALVILIRAVEVAIIASLGVIVLTVLCNAPLAKLQNKFQSKLMAAQDGRLKVTSEALVPLHANNACTFVPTLRKLQDPIRGIPYAIAVVIQAKVAFARIVKFLEAPELQSANVRKRCFNDGLNGSILVKSANFSWEDEISKSTLRNINLEVRPGQKVAICGEVGLGKSTLLAASLGEGPNTQGTVQYERIYLFGSAMDVQRYQETLRSSSLVKDLELFPHADLTEIGERGINLSGSQKQRVQLARVPYKNAEVYLLDDPFSAVEAHTASNLFNDYVMKGLNGKTVLLVTHQVDFLPAFDSVLILQNSRMAANVDNPLVSKSPLIVVYMLIGVISTILLLTRSFAAVAFGLQSSKSLFSQLHISLFLHPRLIRSQHCRSQYTLFTYFAVGASINCYADLLPQKS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1399 514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 78 168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g1399 514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 78 168 - -
Glsi01g1399 514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 239 442 IPR003439 GO:0005524
Glsi01g1399 514 Gene3D - 208 430 IPR027417 -
Glsi01g1399 514 SMART AAA_5 264 419 IPR003593 GO:0016887
Glsi01g1399 514 Gene3D ABC transporter type 1, transmembrane domain 75 169 IPR036640 GO:0005524|GO:0016020
Glsi01g1399 514 Pfam ABC transporter transmembrane region 78 168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi01g1399 514 Pfam ABC transporter 255 310 IPR003439 GO:0005524
Glsi01g1399 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 420 IPR027417 -
Glsi01g1399 514 Pfam ABC transporter 333 371 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1399 Glsi-ChrGlsi01 71877305 71881602 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1399 231 421 Calmodulin-binding Proteins AT2G36910 25.000 8.95e-15 75.9