Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1389 ATGGAGTTGCTGGAGGGTGGTGGCGTTTCGGTCAATCTTTCACATGGAATGGCAGATCTTGCTAGCTACGGGAATGCCAACCGTGACTTAGAGCAGGCATTGATTGCTTTGAAAAAGGGTGCTCAACTGCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCGTTTAGGCTTTCCAATGATGAATCATCTTTAATCTGGATTTCAAGTAGTGGAGAAAGAAGATTGAAACTATCTTCTGTCTCAAAAATTGTTCCTGGACAAAGAACAGCTGTTTTCCAACGGTATCTGCGTCCTGAGAAGGACTATTTGTCTTTTTCCCTTATTTATAACAACGGAAAGAGGTCCCTTGATTTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCACTGATATCTTCTGGTCAAGGTGGGCGGTCCAAAATTGATGGATGGAATGAAGGGGGTCTCTATCTTGATGATAGCAGAGACTTGAAGTCTAATAGTCCAAGTCAAAGTTCAGCTAGTACTTCACGAGATATTAACTCTCCTGACATTTCTGTGAGTCTTAATCCAAATACTTCTCCAAAGTCCTTTCAACCTGAGAATACTGGGAATTCTGAAAGATCACATGCACCACCAGACCCAACAAATATGCAAGTAAAAGGATCTGGTTCAGATGCTTTTCGAGTTAGTGTTTCAAGTGCCCCCAGCACATCAAGTCATGGATCTGCTCCAGATGATTGTGATGCTCTGGGGGATGTATACATATGGGGGGAGGTTATCGCTGAGAATGTTGTGAGAGTTGGTGGTGATAAAACTGCCAATCATTTGAGCCCAAGGGCAGATGTGCTTCTCCCCAGGCCACTGGAGTCCAATGTCGTTTTAGATGTACATCATATAGCATGTGGTGTTAGACATGCTGCACTAGTCACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCCGGAGGACGCCTAGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTCATTTAGTTGAAGCGTTGGCTGCTACAACTGTTGATTTTGTTGCCTGTGGTGAGTTTCATACCTGTGCTGTTACAGTGGCTGGGGAAATATATACTTGGGGTGATGGAACTCATAATGCTGGACTTCTTGGTCATGGCACTTGTGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCACTAGAGGGACTTCAAGTTGCTTTAGTCACTTGTGGTCCATGGCACACTGCCTTGGTAACTTCAACTGGGCAGCTCTTTACATTTGGTGATGGAACATTTGGGGTCTTGGGTCATGGAGATAGGGAGAATGTTTCATATCCTAGAGAAGTAGAATCCTTGTCTGGGTTAAGGACAGTAGCTGTTGCATGTGGAGTATGGCATACTGCAGCTGTGGTAGAGGTTATTGTGACACAATCAAGTGCAAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAGAATCGCCTTGGACATGGAGATAAAGAGGCCCGACTTGAACCAACTTGTGTGCCTTCACTTATTGATTACAATTTCTATAAAATTGCTTGTGGGCACAGTTTGACAGTTGGACTGACGACATCAGGATGTGTTTTTACAATGGGAAGCACGGTTTATGGTCAGCTTGGAAATCCACAGTCTGATGGAAAGCTGCCCTGCTTGGTTGAAGACAAGCTTTCTGAAGAATCTGTTGAAGAAATTGCATGTGGTGCATATCATGTTGCAGTTTTAACTTCCAAAAATGAAGTTTATACATGGGGGAAGGGTGCTAATGGGAGGTTGGGTCATGGAGATGTTGAAGATCGAAAAACACCAGTGTTGGTCGAAGCGTTGAAAGATAGACATGTTAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAATGGGTATGTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGGCAGGCATTTGGTTTCACTAGAAAGAGGCACAATTGTTATAATTGTGGACTTGTGCATTGCCACTCATGCAGTTCAAGGAAAGCTTTAAGAGCGGCTCTGGCTCCTAATCCAGGCAAGCCATATCGTGTTTGTGATTCTTGTTATGCAAAATTGAACAAGGTGGCAGAAGCTGGCAATAATAATAGGAGGAATTCTATGCCTCGTTTGTCGGGTGAAAACAAGGACAGGCTAGACAAGTCTGAGATAAGATTGTCCAAGTCACCGGTTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGGAAGAAGGCTGATACATTCTCCCTGGTTCGCACCTCGCAAGCCCCTTCTTTGCTGCAGCTGAAAGATGTCTTGTCTGCTGCTGTTGATCTAAAACGAACGGTTCCAAGACCAGTTCTTACACCATCTGGAGTAAGCTCCAGGTCTGTGTCCCCTTTCTCTAGAAGACCAAGTCCCCCTCGTTCAGCTACACCTATTCCAACAACATCAGGACTTTCCTTCTCAAAAAGTACAACTGATAATTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCTGAAGTTACGTGCACAGGTTGAGAGCCTGAAACAAAGATGTGAATTGCAAGAATTAGAGCTTCAAAGGTCAGAAAAGAGAACTCAGGAAGCTATGGCGCTGGCTGTGGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAATCTCTTACAGCACAGCTCAAAGCTCTAGCTGAGAGGCTACCCCCTGGAGTTTATGATGCTGAGAACATCAGCCCAGCATACTTACTGAATGGTTTGGAGCCAAATGGCATCCACTATCCTGACTCAAATGGGGAGCACCACACCAGAGCAGAGTCAATCAGCGGCTCTAGCTTGGCATCCATAGGATTTGAGTCTTCTCTGTTGAATAGAACTGAGGGCACAGGAACCTATGCAACCAATTTTTACCAGCAGAGCCGGGGGCTTGTATCTTCTAATGGGGCAGATGAATACCCTGATGTTAAATTTCACAATGGTAGTGGTATAGTTCACACAAGCAGCAGTAGCATGTCAGATACTGTTGATGGCCGGGATTCCGGGCCTCTTCAAGATGGCGAGAGTGGTTTGAGATCAAGGACTGCTGTACTGGCTGCTAATAGTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTTTATATAACACTCATGGCCTTGCGTGATGGAACAAGAGATCTAAAACGAGTGCGCTTCAGCCGACGAAGATTTGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAATCGTGAGAAGGTATATGAAAGGTACAATGTTCGTAGTGCTGACAAGTCTGCCGGTCAAGCAGGTCGGAGGGCAGAGGGTGCAGTTTCACCTGTTTCCCAATCCTAG 3408 0.4442 MELLEGGGVSVNLSHGMADLASYGNANRDLEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWISSSGERRLKLSSVSKIVPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWNEGGLYLDDSRDLKSNSPSQSSASTSRDINSPDISVSLNPNTSPKSFQPENTGNSERSHAPPDPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVIAENVVRVGGDKTANHLSPRADVLLPRPLESNVVLDVHHIACGVRHAALVTRQGEIFTWGEESGGRLGHGVGKNVVQPHLVEALAATTVDFVACGEFHTCAVTVAGEIYTWGDGTHNAGLLGHGTCVSHWIPKRIAGPLEGLQVALVTCGPWHTALVTSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTVAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEARLEPTCVPSLIDYNFYKIACGHSLTVGLTTSGCVFTMGSTVYGQLGNPQSDGKLPCLVEDKLSEESVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPVLVEALKDRHVKYIACGSNYSAAICLHKWVCGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEAGNNNRRNSMPRLSGENKDRLDKSEIRLSKSPVPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVLSAAVDLKRTVPRPVLTPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSTTDNLKKTNELLNQEVLKLRAQVESLKQRCELQELELQRSEKRTQEAMALAVEESAKSKAAKEVIKSLTAQLKALAERLPPGVYDAENISPAYLLNGLEPNGIHYPDSNGEHHTRAESISGSSLASIGFESSLLNRTEGTGTYATNFYQQSRGLVSSNGADEYPDVKFHNGSGIVHTSSSSMSDTVDGRDSGPLQDGESGLRSRTAVLAANSNQIEAEWIEQYEPGVYITLMALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSADKSAGQAGRRAEGAVSPVSQS 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1389 1135 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 422 473 IPR000408 -
Glsi01g1389 1135 FunFam PH, RCC1 and FYVE domains-containing protein 1 475 646 - -
Glsi01g1389 1135 Gene3D - 29 145 IPR011993 -
Glsi01g1389 1135 MobiDBLite consensus disorder prediction 160 224 - -
Glsi01g1389 1135 SMART fyve_4 639 708 IPR000306 GO:0046872
Glsi01g1389 1135 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 460 470 IPR000408 -
Glsi01g1389 1135 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Glsi01g1389 1135 MobiDBLite consensus disorder prediction 798 839 - -
Glsi01g1389 1135 FunFam Putative E3 ubiquitin-protein ligase HERC1 647 715 - -
Glsi01g1389 1135 Gene3D - 379 653 IPR009091 -
Glsi01g1389 1135 MobiDBLite consensus disorder prediction 713 743 - -
Glsi01g1389 1135 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 589 640 IPR000408 -
Glsi01g1389 1135 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 421 IPR000408 -
Glsi01g1389 1135 FunFam PH, RCC1 and FYVE domains-containing protein 1 224 474 - -
Glsi01g1389 1135 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 408 418 IPR000408 -
Glsi01g1389 1135 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 537 588 IPR000408 -
Glsi01g1389 1135 MobiDBLite consensus disorder prediction 1112 1135 - -
Glsi01g1389 1135 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 485 536 IPR000408 -
Glsi01g1389 1135 SUPERFAMILY RCC1/BLIP-II 252 642 IPR009091 -
Glsi01g1389 1135 MobiDBLite consensus disorder prediction 1004 1038 - -
Glsi01g1389 1135 Coils Coil 840 881 - -
Glsi01g1389 1135 MobiDBLite consensus disorder prediction 1010 1026 - -
Glsi01g1389 1135 ProSiteProfiles BRX domain profile. 1055 1110 IPR013591 -
Glsi01g1389 1135 CDD PH_PLC_plant-like 28 140 - -
Glsi01g1389 1135 MobiDBLite consensus disorder prediction 723 738 - -
Glsi01g1389 1135 Pfam Transcription factor regulating root and shoot growth via Pin3 1054 1109 IPR013591 -
Glsi01g1389 1135 MobiDBLite consensus disorder prediction 164 224 - -
Glsi01g1389 1135 FunFam Putative E3 ubiquitin-protein ligase HERC1 28 148 - -
Glsi01g1389 1135 Pfam Regulator of chromosome condensation (RCC1) repeat 315 363 IPR000408 -
Glsi01g1389 1135 Pfam Regulator of chromosome condensation (RCC1) repeat 422 470 IPR000408 -
Glsi01g1389 1135 Pfam Regulator of chromosome condensation (RCC1) repeat 484 531 IPR000408 -
Glsi01g1389 1135 Pfam Regulator of chromosome condensation (RCC1) repeat 536 585 IPR000408 -
Glsi01g1389 1135 Pfam Regulator of chromosome condensation (RCC1) repeat 367 417 IPR000408 -
Glsi01g1389 1135 Pfam Regulator of chromosome condensation (RCC1) repeat 590 637 IPR000408 -
Glsi01g1389 1135 Pfam FYVE zinc finger 641 707 IPR000306 GO:0046872
Glsi01g1389 1135 Pfam Pleckstrin homology domain 31 139 IPR001849 -
Glsi01g1389 1135 Coils Coil 896 916 - -
Glsi01g1389 1135 PRINTS Chromosome condensation regulator RCC1 signature 584 605 IPR000408 -
Glsi01g1389 1135 PRINTS Chromosome condensation regulator RCC1 signature 367 383 IPR000408 -
Glsi01g1389 1135 PRINTS Chromosome condensation regulator RCC1 signature 424 438 IPR000408 -
Glsi01g1389 1135 PRINTS Chromosome condensation regulator RCC1 signature 317 333 IPR000408 -
Glsi01g1389 1135 PRINTS Chromosome condensation regulator RCC1 signature 408 424 IPR000408 -
Glsi01g1389 1135 PRINTS Chromosome condensation regulator RCC1 signature 526 544 IPR000408 -
Glsi01g1389 1135 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 301 311 IPR000408 -
Glsi01g1389 1135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 713 IPR013083 -
Glsi01g1389 1135 Gene3D - 193 378 IPR009091 -
Glsi01g1389 1135 CDD FYVE_like_SF 650 703 - -
Glsi01g1389 1135 SUPERFAMILY FYVE/PHD zinc finger 641 712 IPR011011 -
Glsi01g1389 1135 Pfam Transcription factor BRX N-terminal domain 891 926 IPR027988 -
Glsi01g1389 1135 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 74 911 - -
Glsi01g1389 1135 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 645 707 IPR017455 -
Glsi01g1389 1135 MobiDBLite consensus disorder prediction 801 818 - -
Glsi01g1389 1135 SUPERFAMILY PH domain-like 30 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1389 Glsi-ChrGlsi01 69127435 69135081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1389 1056 1126 Major Intrinsic Protein MIP AT1G31880 47.887 1.07e-14 75.5