Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1358 ATGCCAACGGCTACTTTCATTCCTACAGCTGCAACAAAGCTTCTGCCTGGGGCGGTGACCGTGAGAGAAGAAAGCAGCAAATTAGTAGAGAACCCAGAGAATGATCTTGTGATGAGCCTTACCATATCTGATCAGATCACTGGAGATACTCGAGCAAACTTGGCTCAAGTGATCAGTCACTATGTGGAGACTCTGTCTCACTGCAAAATGCACATTCTGGGATACCCCGCTAATCTAGACTTCGACTATGGTGCATTAGCTCCGTTGCTGGACTTTCACATAAACAATGCTGGTGATCCATTTATAAGGAGCAGCTTCGCTCTCAATTCTTTAGCCTTTGAGGTTTGCGTTCTTGATTGGTTTGCTAACTTATGGGAGATAGAGAAGAATGAGTACTGGGGATACATCACCACTGGTGGAACTGAAGGCAATCTTCATGGGATCTTAGCTGGAAGAGAACAATTGCCAGATGGGATACTATATACCTCACAGGATTCGCATTATTCAGTGTTCAAAATAGCAAAAATGTACAGAATGCAATGTGTGAAGGTTGGCACTTTGACATCTGGTGAGATTAATTGTGCTGATCTAAAGTCTTCGCTTCTTGCTCACAAGGACAAGCCAGCCATCATCAACCTAAATATAGGGACAACTATGAAAGGAGCTGTTGATGACCTAGATCTTGTGGTACAAGCACTTGAAGAAAGTGGTTTCCCTCCTGATCGATTCTATATTCATTGTGATGGGGCTCTCTTTGGAATTATGCTTCCTTTCGTTAAACAAGGACCAAGGATTAGTTTCAAGAAACCTATTGGAAGCATAACTATCTCTGGCCACAAGTTCTTGGGGTGCCCTATTCCTTGTGGGGTTGTAATAACTCGTTTGGAATACATCAATGCCCTCTCTAGTGACGTTGAGTACATTGCCTCGAGGGATGTCACAATCACAGGAAGCCGCGGAGGGCATGCTCCAATCTTTCTTTGGTACTCTCTGAGCAAGAAAGGTTTAAAAGGGCTCGAGAAAGATGTCCAGAAGTGCATAGCGAATGCCCGTTACTTGCGGAATCGACTCCGTGATGCTGGCATCAGCGCTATGATGAACGAGTTCAGCAGCACCGTAGTGTTTGAGAGGCCTCAAGATGATGGCTTTGTTCGTAGATGGAACTTGGCTTGCAAAGGAAACATAGCCCATATAGTGGTGATTCAGCATGTTAGTATTGCAATGTTGGACTCGTTCGTTAGTGAGTTTGTTCAGAAACGAACCGTCTGGTACGAAGATGGTCAGAATCATGAGCCTCTATGCATTGCAGATGAAGTTGGTGTTGGCAATTGTGCTTGCAAATTGCATAGTTGA 1353 0.4442 MPTATFIPTAATKLLPGAVTVREESSKLVENPENDLVMSLTISDQITGDTRANLAQVISHYVETLSHCKMHILGYPANLDFDYGALAPLLDFHINNAGDPFIRSSFALNSLAFEVCVLDWFANLWEIEKNEYWGYITTGGTEGNLHGILAGREQLPDGILYTSQDSHYSVFKIAKMYRMQCVKVGTLTSGEINCADLKSSLLAHKDKPAIINLNIGTTMKGAVDDLDLVVQALEESGFPPDRFYIHCDGALFGIMLPFVKQGPRISFKKPIGSITISGHKFLGCPIPCGVVITRLEYINALSSDVEYIASRDVTITGSRGGHAPIFLWYSLSKKGLKGLEKDVQKCIANARYLRNRLRDAGISAMMNEFSSTVVFERPQDDGFVRRWNLACKGNIAHIVVIQHVSIAMLDSFVSEFVQKRTVWYEDGQNHEPLCIADEVGVGNCACKLHS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1358 450 Pfam Pyridoxal-dependent decarboxylase conserved domain 45 373 IPR002129 GO:0016830|GO:0019752|GO:0030170
Glsi01g1358 450 Gene3D - 105 320 IPR015421 GO:0003824
Glsi01g1358 450 PANTHER - 38 450 - -
Glsi01g1358 450 Gene3D Aspartate Aminotransferase, domain 1 325 420 IPR015422 GO:0003824
Glsi01g1358 450 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 273 294 IPR021115 GO:0016831
Glsi01g1358 450 SUPERFAMILY PLP-dependent transferases 73 418 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1358 Glsi-ChrGlsi01 68305808 68308221 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1358 215 361 Calmodulin-binding Proteins AT3G17760 27.329 1.45e-08 55.1