Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1348 ATGCCGGACGCCCCACAGCGGGGGTCCCACCATCGTAGGGCCCACTCCGATACGTCCTTCCGCATCGCCAACTTCGATGAGCTGCTCCTATTCGACCCTTCTGACCTCGACATCTCCAACCTCCCTTCCCCGGTGCTGCCCAACGCTCCCGATGTTACTGGGCATGGAGCGCCGGCAGCCGTGGATTCGGCCTCGAAGTCCTCGGACGAATCCAGCGGCCGGAATTCGAGGCCTAGGCCGGCGGGTCCCCCAATCGGCCATCTCCGGAGCTTGTCTGTGGACTCAGATTTCTTCAACGGCCTGGGCTTGACCAGCGGCGATGGCAACAAATTTGGCGGGAAAACTGTCGAGGAGGGAAGGGTGGTTCGTCACAGGCACAGTAATTCCATGGATGGGTCATCGTCGCTGTCATTTGAGGCCGACTCTTCCATGGATATTGACGGTGTGAAGAAGGCCATGGCCCCTGATAAGCTCGCTGAACTTGCTCTCGTTGATCCCAAGAGAGCTAGGAGGATTCTTGCTAATAGGCAATCTGCTGCCCGATCAAAGGAGAGAAAAATTCGTTATACAAATGAGCTGGAAAGGAAGGTTCAGACGCTTCAGACTGAAGCAACTAACCTCTCTGCCCAAGTGACCATGCTTCAGAGAGACACTTCAGGTTTGACTACTGAGAACAAGGAGCTTAAACTGCGCTTAGAGGCTATGGAACAACAAGCACAGCTTAGAGATGCTCTCAATGAAGCATTGAAGGAAGAACTGCAGCGCCTCAAGCTACAAACTAACCAAATTGCTGCTATTAATGGTAACCCTTCTTTCGGTGGGCTGCTCTCTCAATTTGCTTCCCAGTTAGCCTTGAATCCATTTGCAAATCCTCCACTGCAGCAGCCGCAACAGCAACCGCAGCATGGCATGGCACCATCACCTTCTGATCAGCCTTTTAACGGGCAGCCAGGCCCTGACTTCTTAGACTTCAATCGGAAGAACTAG 987 0.537 MPDAPQRGSHHRRAHSDTSFRIANFDELLLFDPSDLDISNLPSPVLPNAPDVTGHGAPAAVDSASKSSDESSGRNSRPRPAGPPIGHLRSLSVDSDFFNGLGLTSGDGNKFGGKTVEEGRVVRHRHSNSMDGSSSLSFEADSSMDIDGVKKAMAPDKLAELALVDPKRARRILANRQSAARSKERKIRYTNELERKVQTLQTEATNLSAQVTMLQRDTSGLTTENKELKLRLEAMEQQAQLRDALNEALKEELQRLKLQTNQIAAINGNPSFGGLLSQFASQLALNPFANPPLQQPQQQPQHGMAPSPSDQPFNGQPGPDFLDFNRKN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1348 328 CDD bZIP_plant_RF2 168 217 IPR044759 GO:0003700|GO:0006355
Glsi01g1348 328 SMART brlzneu 163 227 IPR004827 GO:0003700|GO:0006355
Glsi01g1348 328 MobiDBLite consensus disorder prediction 287 311 - -
Glsi01g1348 328 Pfam bZIP transcription factor 167 225 IPR004827 GO:0003700|GO:0006355
Glsi01g1348 328 FunFam Transcription factor VIP1 166 219 - -
Glsi01g1348 328 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 4 303 - -
Glsi01g1348 328 Gene3D - 165 226 - -
Glsi01g1348 328 MobiDBLite consensus disorder prediction 39 89 - -
Glsi01g1348 328 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 165 228 IPR004827 GO:0003700|GO:0006355
Glsi01g1348 328 Coils Coil 190 266 - -
Glsi01g1348 328 MobiDBLite consensus disorder prediction 287 328 - -
Glsi01g1348 328 SUPERFAMILY Leucine zipper domain 167 221 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1348 Glsi-ChrGlsi01 68096187 68101532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1348 1 327 bZIP Transcription Factor Family AT1G43700 52.187 7.30e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi01g1348 bZIP_1 1.4e-07 CL0018