Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1346 ATGGGTAGAAAGAAGCCGACCTCCCGTGAGGATGAGAACCCACCCGCTGCATCTCAGGGCGGTGGGAAGTCGAAAAAGAAGGCCCTTATGATAGATGATGATGAGTATTCTATTGGAACGGAGCTATCGGAGGAGGTGCCAGCTCAGGAGGAGACGGCCGCAGTGACGGGAAAGAAGAAAGGTAAGAAGGGGAACTCGAAAGCATCGCAATCTAAGGACGAAGATGTGGAAATAGCGATGGAGGAGGATGCCGATGATGGACCTGAAGTTGTGTTTACTGGGAAGAAGAAGGGGAAATCGAAAAAGGGTGGTGGGAACAGTGTGTTTTCTGCTTCGAGCTTTGGTTTGCTTGGTAATGAGGAGGATGGGGAGGATGATGATGAAAACGAGAAATCCAGCTTAACTGGTGAGCAAGACAGTGATGAGGACGATAAACCAGTGGTTAGTTTTTTGGGTAAGAAGAAGCCCTCGAAGGGTTCAAAAAAGGGTGGTGGTAGTTTGTTCGCTGCATCAGCTTTTGATGCTATTGATGATGATAATGAAGGTGAGGTGATTGATAATTCCCTGGAAAACAGCGGAGACAAGAATGATGACATAGATGAACCGGTTATTGCTTTTACGGGGAAGAAAAAATCATCTAAAAGTACCAAAAAGGGCGGTGCTGTCACAGCATCTAGTTTTGATGATATTGACGGAGAGAAGAACAAAGATGAAAAGGAAGATGAGGATGAAGACGTTGACGTTGCTCCGATCACTTTCTCAGGTAAGAAAAAGAAGTCATCCAAGTCTTCAAAGAAGGCTGTTAATTCATTTAGTGTGGCTTTTGCTGACAAGGAGGTTGATGATAATGTTGCTGTGCCCGAGTCTGATAGAGCTGGTGAAGATAAGGTTGAGGATGAAGATGTTCCTGTAGTTGCATTTTCAGGTAAAAAAAAGTCTTCTAATAAGAAAGGCAAGATTCCTGCAGCCAAAGCTAGTGATGACTTTGATTTTGGTAGTGAAAGTGTTGATGTCGATGAGCCTGAGCAACCTAGGGTAGCTGACAACAACAATGTTAATAAGAGTGAAGAGGTTACTGAAACTTCAAAAAATAAGAAGAAGAAGAATAAAAAGACTGGAAGAACTGCTCAAGAAGAGGAAGATTTGGACAAGCTTCTTGCTGAGCTTGGTGAGGGGCCTCCAGCAAAACCTGCTACTCCTCCTACACGGGATGATGAAGTTGAGGCTCCGCCTGAAGTAGTTGCTCCTGATGATGCTTTAGGGGGGAAAGAACGGGAAGAAGAAACAGTGGAGTCAGCTGCTGCAAAAAAGAAGAAAAAGAAAAAGGAAAAGGAAAAGGAGAAGAAGGCTGCAGCTGCAGCAGCAGCAGCCGCTGGAAGTGCACCAGATAATGAAAAGAAAGAAGAACTTAAATCTGAGACAATAGAATCAAAGAAGAATGATGCCAAGACTAAAGCAGCCGACAAGAAAGTGCCGAAGCATGTTAGGGAGATGCAAGAGGCACTAGCTCGAAGAAAAGAGGCTGAAGATAGGAAGAAAAGGGAAGAAGAGGAGAAGTTAAGGAGGGAAGAAGAGGAGCGACGTAGGCAGGAGGAACTTGAGAGACAAGCAGAAGAGGCTAGACGTAGGAAAAAGGAAAGAGAGAAGGAAAAGCTCCAGAAGAAGAAGCAAGAAGGTAAACTATTAACTGGTAAGCAGAAGGAAGAAGCTCGTCGATTGGAGGCCATGAGGAAGCAGTTTCTTTCTGGTACAGGGGGCGTGTCTCTCCCTACAGGGGACTCTGGTGCACCAGCCAAAAGACCCATATATAAGACAAAGAAGTCAAAACAAACCCATCATCATCAGAATGGTACTGCCCCTGCTAAGGCAGATGAAATTTTAGAAGCAAAGGAAAATCAGGAGACCACCCCTGATGTGGATTCATTGGAACCAGAGAAGGTTGAAGTGGTGGATTCGATGCAGGAGGAGGACAAAGTCGAACCTTCTGAAGCTGTTGAAGAGGATGGAGTGGAAGAAGATGATGTAGAGGATGAATGGGATGAAAAGAGCTGGGATGATGTTAATTTAAATGACAAAAGCGCTTTTGCGGATGAAGAGGCTGAGTCAGAGCCCGAACCCCTTGTGAAAAAGGAGATAAAGAATGCTGTCCCAACTCACAATGCTGGCACTGCTAAGAAAGCTGTTTCTCAGCCTCCGACTGAGCAGATTGAAAGCAAAAAGCAGGCTGAAAAGCAACCACCAAATTCAGCTGTGCCTCTTAAGCCGAGTGAAGAGAACCTTCGTTCCCCAATTTGCTGTATTATGGGCCATGTGGACACAGGTAAAACTAAGCTGCTGGACTGTATTCGAGGTACTAATGTTCAGGAAGGTGAGGCTGGTGGTATCACTCAGCAGATTGGTGCAACATACTTTCCTGCTGAGAACATACGTGAAAGAACAAAGGAACTAAAAGCTGATGCGAAGCTGAAAGTTGCAGGTCTACTGGTGATTGATACCCCTGGGCACGAATCATTTACTAACTTAAGGTCACGGGGTTCAGGTTTATGTGATATTGCAATTTTGGTTGTTGACATAATGCATGGATTAGAACCTCAGACAATAGAATCACTCAATCTCTTGAAAATGAGGAATACAGAATTCATTGTTGCATTGAACAAGGTTGACAGACTATATGGTTGGAAAACATGTCGCAATTCTCCAATTGTTAAGGCAATGAAGCAGCAAACCAAAGATGTGCAAAATGAGTTCAATCATAGACTTACTCAGATTGTCACTCAATTCAAGGAACAGGGTTTAAACACTGAGTTGTACTATAAAAACAAAGAAATGGGAGAGACTTTCAGTATTGTACCTACAAGTGCAATAAGTGGTGAAGGAATCCCAGATTTGTTATTACTTTTGGTTCAATGGACCCAGAAAACAATGGTTCAGAAACTTACATATAGTGAGGAAGTGCAGTGTACAGTTTTGGAAGTCAAGGTCATCGAAGGGCATGGAACTACTATTGATGTTGTCTTGGTTAACGGTGTTCTTCATGAAGGAGATCAAATAGTTGTCTGTGGAATGCAGGGCCCTATTGTTACCACAATTCGAGCTTTATTGACACCTCATCCAATGAAGGAACTACGTGTTAAGGGCACATATCTCCATCACAAAGAAATTAAGGCTGCTATGGGTATTAAAATCACTGCCCAGGGGCTTGAACATGCTATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTAGAAGATGTTAAAGAAGCAACTATGGAGGATATGAAGTCGGTTATGAGCAGGATTGACAGGAGTGGTGAGGGAGTTTGTGTACAGGCATCTACCCTTGGTTCTTTGGAAGCATTGCTGGAGTTTTTGAAAACACCAGAAGTGAGCATTCCTGTTAGCGGTATAAGCATAGGCCCTGTCCATAAAAAGGATGTAATGAAGGCCAGTGTAATGCTTGAAAAGAAGAAAGAGTTTGCCACTATTTTGGCATTTGATGTCAAAGTCACTCCTGAGGCTCGGGAACTTGCTGATGAATTGGGTGTGAAAATCTTTATTGCTGATATCATTTATCACTTATTTGACCAATTTAAAGCCTATATTGAAAACATTAAGGAGGAGAAAAAGAGAGAAGCAGCTGATGAAGCAGTCTTCCCATGTGTTCTGAAAATCTTACCAAACTGCATTTTCAACAAGAAGGATCCAATTGTTTTGGGAGTTGATATCCTTGATGGCATTGCAAAGGTTGGGACTCCAATTTGTATTCCTTCCAGAGAGTTTACTGATATCGGTCGCATTGCATCCATTGAAAATAACCATAAACCTGTTGATTATGCCAAGAAAGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATTCGGAGGAGCAACAAAAAATGTTTGGAAGGCATTTTGAAATTGATGATGAACTTGTAAGCCATATCTCAAGGAGATCTATTGATATTCTCAAATCGAATTATCGGGATGATCTCAATATGGAGGAATGGAGGCTGGTTGTGAAATTGAAAACTCTTTTCAAGATACAATGA 4059 0.4279 MGRKKPTSREDENPPAASQGGGKSKKKALMIDDDEYSIGTELSEEVPAQEETAAVTGKKKGKKGNSKASQSKDEDVEIAMEEDADDGPEVVFTGKKKGKSKKGGGNSVFSASSFGLLGNEEDGEDDDENEKSSLTGEQDSDEDDKPVVSFLGKKKPSKGSKKGGGSLFAASAFDAIDDDNEGEVIDNSLENSGDKNDDIDEPVIAFTGKKKSSKSTKKGGAVTASSFDDIDGEKNKDEKEDEDEDVDVAPITFSGKKKKSSKSSKKAVNSFSVAFADKEVDDNVAVPESDRAGEDKVEDEDVPVVAFSGKKKSSNKKGKIPAAKASDDFDFGSESVDVDEPEQPRVADNNNVNKSEEVTETSKNKKKKNKKTGRTAQEEEDLDKLLAELGEGPPAKPATPPTRDDEVEAPPEVVAPDDALGGKEREEETVESAAAKKKKKKKEKEKEKKAAAAAAAAAGSAPDNEKKEELKSETIESKKNDAKTKAADKKVPKHVREMQEALARRKEAEDRKKREEEEKLRREEEERRRQEELERQAEEARRRKKEREKEKLQKKKQEGKLLTGKQKEEARRLEAMRKQFLSGTGGVSLPTGDSGAPAKRPIYKTKKSKQTHHHQNGTAPAKADEILEAKENQETTPDVDSLEPEKVEVVDSMQEEDKVEPSEAVEEDGVEEDDVEDEWDEKSWDDVNLNDKSAFADEEAESEPEPLVKKEIKNAVPTHNAGTAKKAVSQPPTEQIESKKQAEKQPPNSAVPLKPSEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVAGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNSPIVKAMKQQTKDVQNEFNHRLTQIVTQFKEQGLNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVQKLTYSEEVQCTVLEVKVIEGHGTTIDVVLVNGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDVKEATMEDMKSVMSRIDRSGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKKEFATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIENIKEEKKREAADEAVFPCVLKILPNCIFNKKDPIVLGVDILDGIAKVGTPICIPSREFTDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNSEEQQKMFGRHFEIDDELVSHISRRSIDILKSNYRDDLNMEEWRLVVKLKTLFKIQ 1352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1346 1352 CDD IF2_eIF5B 763 973 - -
Glsi01g1346 1352 MobiDBLite consensus disorder prediction 716 756 - -
Glsi01g1346 1352 Gene3D - 1104 1208 IPR036925 -
Glsi01g1346 1352 FunFam Eukaryotic translation initiation factor 5B 1102 1208 - -
Glsi01g1346 1352 Gene3D - 754 982 IPR027417 -
Glsi01g1346 1352 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 760 1051 IPR027417 -
Glsi01g1346 1352 MobiDBLite consensus disorder prediction 418 438 - -
Glsi01g1346 1352 CDD aeIF5B_II 984 1094 - -
Glsi01g1346 1352 FunFam eukaryotic translation initiation factor 5B 983 1102 - -
Glsi01g1346 1352 SUPERFAMILY Translation proteins 1219 1351 IPR009000 -
Glsi01g1346 1352 Gene3D Translation factors 983 1103 - -
Glsi01g1346 1352 MobiDBLite consensus disorder prediction 624 659 - -
Glsi01g1346 1352 CDD IF2_aeIF5B_IV 1223 1318 - -
Glsi01g1346 1352 FunFam Eukaryotic translation initiation factor 5B 1215 1352 - -
Glsi01g1346 1352 Coils Coil 423 455 - -
Glsi01g1346 1352 FunFam Eukaryotic translation initiation factor 5B 754 982 - -
Glsi01g1346 1352 PRINTS GTP-binding elongation factor signature 764 777 IPR000795 GO:0003924|GO:0005525
Glsi01g1346 1352 PRINTS GTP-binding elongation factor signature 828 838 IPR000795 GO:0003924|GO:0005525
Glsi01g1346 1352 PRINTS GTP-binding elongation factor signature 844 855 IPR000795 GO:0003924|GO:0005525
Glsi01g1346 1352 PRINTS GTP-binding elongation factor signature 880 889 IPR000795 GO:0003924|GO:0005525
Glsi01g1346 1352 MobiDBLite consensus disorder prediction 462 576 - -
Glsi01g1346 1352 MobiDBLite consensus disorder prediction 133 151 - -
Glsi01g1346 1352 Pfam Elongation factor Tu GTP binding domain 764 972 IPR000795 GO:0003924|GO:0005525
Glsi01g1346 1352 MobiDBLite consensus disorder prediction 660 684 - -
Glsi01g1346 1352 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1085 1214 IPR036925 -
Glsi01g1346 1352 Pfam Translation-initiation factor 2 1086 1201 IPR023115 -
Glsi01g1346 1352 MobiDBLite consensus disorder prediction 188 207 - -
Glsi01g1346 1352 Gene3D Translation factors 1215 1352 - -
Glsi01g1346 1352 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 760 976 IPR000795 GO:0003924|GO:0005525
Glsi01g1346 1352 MobiDBLite consensus disorder prediction 1 690 - -
Glsi01g1346 1352 Coils Coil 491 562 - -
Glsi01g1346 1352 NCBIfam small GTP-binding protein domain 765 891 IPR005225 GO:0005525
Glsi01g1346 1352 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 462 1348 IPR015760 -
Glsi01g1346 1352 MobiDBLite consensus disorder prediction 281 306 - -
Glsi01g1346 1352 MobiDBLite consensus disorder prediction 372 387 - -
Glsi01g1346 1352 Pfam Elongation factor Tu domain 2 999 1074 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1346 Glsi-ChrGlsi01 68049926 68058904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1346 193 1352 Eukaryotic Initiation Factors Gene Family AT1G76810 67.003 0.0 1244