Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1340 ATGCTGGGAGACTCAACTGCGTTGGGAGGAGGAGGAGGAGGTAGCTCTGGAGATGCAGTGGCTGTGGCCGCAGCAGCTGCTGCATCGGCGGCGGTGGGAGGAGCTGGAACCCAGGACGGTGCTGAGTCGGCGGTTGCGGCGGAGGCAGGAGGTGGTGGGGTTGGATCAAATTCAGGTGAGGATGATAGAGGGAGAGGAGGCGAAGAGGGTGGTGACCGGAGCTTCGGTGGCAACCGGTGGCCTCGCCAGGAAACGTTAGCGCTCTTGAAGATACGCTCCGACATGGACGTGGCTTTTCGAGATGCCAGTGTGAAGGGTCCCTTGTGGGAAGAAGTTTCCAGGAAGCTAGCAGAACTTGGGTACCATAGAAGTGCTAAGAAATGCAAAGAGAAATTCGAGAACGTCTACAAGTACCATAAGAGAACAAAGGAAGGTCGAAGTGGGAAATCAGATGGCAAAACGTATCGTTTCTTCGATCAATTAGAAGCTCTTGATCATCATCATCATCATCATCATCATCAAAACCACCCTTCAATTCAATCTCCTCCTCCCCCACAACCTCCACCATCATCAAAATCTCCAATGGCGGCGCCACCAGTAGCCAACCCTCCTGCTCCTCCTAATGTCACTGTTCCATCAACAATTGCGCTTCCTATGGCTATGCCTCAAGGCATTGTCAGTGTCACCTCGATTCCTCCATACCCACCAACGAACCCTACGATTTTCCCAGTGCCTTCATCTACAGCAAACCCTACTATCAATCCTCCTCAACCCAGTTTTCCGTCTTCTTTTACCAGCATACCCACTGATCTTTTGTCCAATTCTAGCTCTTCATCAACTTCGTCCGACGAAACACTAGAAGGTCGGCGTAAGCGGAAGCGGAAATGGAAGGACTTTTTTGAGAGACTAATGAAGGAAGTGATAGAGAAGCAGGAGGAATTGCAGAAGAGGTTCCTGGAAGCCATAGAGAAACGCGAACACGAAAGAATGGTTCGCGAAGAAGCTTGGAGAATGCAGGAGATGACGAGGATCAACAAAGAAAGAGAAATTCTGGCGCAGGAAAGATCTATTGCAGCAGCTAAAGATGCTGCTGTAATGGCGTTTTTACAAAAGATAGCTGAACAGCAGAATCTCGGGTCGGCTTTGAATAACATTAATATGATTCCTCAGCCACAGCTGGCACCACAACCACCTCCGCCACCACCAGTGCAACAAGCAGTTCCAGTTTCGGTCGCGGTACAGGTTCCCGTTTCAGTTCCGGTTACGGTTACCTCTCCGCCGCCGCAGCAGACGGTGATGTCATTGCCAGCGTCAGCTCCACAACAACAATTGCCGCAGCAACAAGTAACGAACATGGAAATTATTATCAAATCTGACAATAATGGGGAAAATTTGATGATGACGCCATCATCGTCATCGACGTCTTCGAGGTGGCCGAGACTGGAGGTTCAGGCATTGATAAAGCTACGTACGAACATGGATGCCAAGTACCAAGAGAATGGACCAAAGGGACCTTTGTGGGAGGAGATCTCAGCCGCCATGAGGAGGCTCGGGTACAACCGGAGCGCCAAAAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTCAAGGAAAGCAACAAGAAGAGGCCAGAAGATTCCAAGACTTGCCCGTATTTTCACCAGCTGGATGCACTATATAGGGAGAAGAATAATAACAAGCTGGAGATTAATATTAATCCTTCATCCTCGTCGGAGAATATGATGGCAGCGCCGCTGATGGTGCAGCCGGAGCAGCAGTGGCCTCCGCAGCAAGATACCCAGCCGGGGCCGGAGGTAATGATGGAAGAGGCGCAGAATGACCACGAGGAAGAAGATGAAGATGACGAAGATAAGGATAGAGTTAGAGAAGAGGAGGAGGAGGAGGATGAAGAGGAAGAAGGGGGAAGTAGTAACTATGAGATAGTGGCAAGCAAGCCAGCTGCTTCAGTGGGTGCATCTGAGTGA 1998 0.5025 MLGDSTALGGGGGGSSGDAVAVAAAAAASAAVGGAGTQDGAESAVAAEAGGGGVGSNSGEDDRGRGGEEGGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRSGKSDGKTYRFFDQLEALDHHHHHHHHQNHPSIQSPPPPQPPPSSKSPMAAPPVANPPAPPNVTVPSTIALPMAMPQGIVSVTSIPPYPPTNPTIFPVPSSTANPTINPPQPSFPSSFTSIPTDLLSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIEKQEELQKRFLEAIEKREHERMVREEAWRMQEMTRINKEREILAQERSIAAAKDAAVMAFLQKIAEQQNLGSALNNINMIPQPQLAPQPPPPPPVQQAVPVSVAVQVPVSVPVTVTSPPPQQTVMSLPASAPQQQLPQQQVTNMEIIIKSDNNGENLMMTPSSSSTSSRWPRLEVQALIKLRTNMDAKYQENGPKGPLWEEISAAMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNNNKLEININPSSSSENMMAAPLMVQPEQQWPPQQDTQPGPEVMMEEAQNDHEEEDEDDEDKDRVREEEEEEDEEEEGGSSNYEIVASKPAASVGASE 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1340 665 CDD GT1 477 541 - -
Glsi01g1340 665 Coils Coil 297 324 - -
Glsi01g1340 665 SMART sant 474 536 IPR001005 -
Glsi01g1340 665 SMART sant 76 138 IPR001005 -
Glsi01g1340 665 MobiDBLite consensus disorder prediction 32 79 - -
Glsi01g1340 665 MobiDBLite consensus disorder prediction 178 207 - -
Glsi01g1340 665 PANTHER FI21293P1 46 624 - -
Glsi01g1340 665 MobiDBLite consensus disorder prediction 263 283 - -
Glsi01g1340 665 FunFam Trihelix transcription factor GT-2 80 141 - -
Glsi01g1340 665 MobiDBLite consensus disorder prediction 596 665 - -
Glsi01g1340 665 CDD GT1 78 143 - -
Glsi01g1340 665 MobiDBLite consensus disorder prediction 167 207 - -
Glsi01g1340 665 MobiDBLite consensus disorder prediction 242 292 - -
Glsi01g1340 665 ProSiteProfiles Myb-like domain profile. 78 136 IPR001005 -
Glsi01g1340 665 MobiDBLite consensus disorder prediction 615 647 - -
Glsi01g1340 665 ProSiteProfiles Myb-like domain profile. 470 534 IPR001005 -
Glsi01g1340 665 Pfam Myb/SANT-like DNA-binding domain 78 164 IPR044822 -
Glsi01g1340 665 Pfam Myb/SANT-like DNA-binding domain 476 563 IPR044822 -
Glsi01g1340 665 Gene3D - 478 539 - -
Glsi01g1340 665 Gene3D - 80 141 - -
Glsi01g1340 665 FunFam Trihelix transcription factor GT-2 478 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1340 Glsi-ChrGlsi01 67968208 67971000 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1340 67 605 Trihelix Transcription Factor Family AT1G76890 46.964 1.94e-145 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi01g1340 Myb_DNA-bind_4 8.1e-23 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g1340 01 67968208 67971000 Glsi01g1340 01 67968208 67971000 ECH