Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1339 ATGATGGATGTGACGGCGGCCCATGAAGGCATCAACGGTGGCGGCGGTGGTGGTGAGATGATGGATACAAATTCAGGTGATGATGAGAAGAGAAATAATGGAGGAGGAGAAGAGGGTGACAAGATGAACTGTGGAGGAAACCGGTGGCCCCGCCAAGAAACTTTTGCTCTCTTGAAGATAAGGTCAGATATGGACGCTGCGTTTCGAGATTCTAGTCTTAAAGGTCCCTTATGGGAAGAAGTTTCAAGGAAACTAGGAGAACTTGGTTATCACAGAAGCGCAAAGAAGTGCAAGGAGAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAGAGCAGAAGTGGGAAACCAGAAGGAAAAACCTACAAGTTTTTTGATCAATTACAAGCCCTTGAAAACCACCAATTCACACTCTCATCTCACACTCCCACTCCGACTTCAAAAACACCACAACCTTCTTCTTCTTTGCCTACAAACACAATAACCTTAATGCAATCAACAAGACCTAGTATTGATGTTTCTGAGACAACCATCTCTTATGTCCCCCCCGCCGCCGCTATTCCATCCACAAACCCGACCCTCATTTCACCACCACCACCACCACCAACCAATCCTAGGAATGTGTTACAACAAGGCAGTAATGTCCCATATTCTTTGCCGAACATGAACTTTGTCTCGACCACCTCGACCTCGTCTTCTACGGCATCCGACGAAGACATGGAGGCAAGGTATAGGAAGAAGAGGAAGTGGAAGGACTACTTCAGGAGGCTGACGAGGCAGGTTCTGGCTGAGCAAGAGGAAATGCAGAAGAGGTTCTTGGAAGCCATAGACAAAAGGGAGAGAGAAAGGGTGGCTCAGCAAGAAGCTTGGAGGATCCAAGAAATGGCCAGGATCAATAGGGAACATGACATCCTCGTACAAGAAAGATCCACTGCAGCTGCTAAGGATGCTGCTGTTATTGCATTCTTGCAGAAGTTGTCTGGTCAAACTCCACCACCACCACCACCACCACCACCTCTGGCCCCGCAGCCGTCACAGCCCCCACCACAAGTACAACCTCAACAACAGCAACCTCAGCAGCAGTTACAGCAACCGCCATTGTTGTCTTGTAACAACAATTTTGAGATCCAGAAAATGAATAATGGTAGTGGTCATGGTCAGAGTGGTTCTCCAATGAGCTCTTCTAGGTGGCCAAAGGCAGAAGTTCACGCTTTGATAAGGTTAAGGACAACTCTTGATGCTAAGTATCAAGAAAATGGGCCAAAGGGTCCACTTTGGGAGGATATATCAGCAGGACTACAAAGGCTTGGGTATAATAGGAGTGCTAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAAAAAGTGAAGGAGAGTAGTAAGCAAAGGCGTGAGGATAGCAAAACATGCCCTTATTTTCATGAGCTTGAAGTTCTATACAAGGAGAAGAGCAAAATCCACAACCCCGTTGGTTCTTCATTTTATAATAGTACTACGAAGCAGCCAAATGAGATGATGGAGCCATTGATGGTGCAACCAGAGCAGCAATGGAGGCCTCCTCCTCCAGTAATGGAAGAACAAGTGAAAGAAAGAGAGGGAGGAATAGAGGAAGAAGAAGAGGAGGATATTGATGATGTTGAAGAAGATGGAGATAGCGTGGAAGATGAAGAACGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACCGTTGAATGA 1737 0.46 MMDVTAAHEGINGGGGGGEMMDTNSGDDEKRNNGGGEEGDKMNCGGNRWPRQETFALLKIRSDMDAAFRDSSLKGPLWEEVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKESRSGKPEGKTYKFFDQLQALENHQFTLSSHTPTPTSKTPQPSSSLPTNTITLMQSTRPSIDVSETTISYVPPAAAIPSTNPTLISPPPPPPTNPRNVLQQGSNVPYSLPNMNFVSTTSTSSSTASDEDMEARYRKKRKWKDYFRRLTRQVLAEQEEMQKRFLEAIDKRERERVAQQEAWRIQEMARINREHDILVQERSTAAAKDAAVIAFLQKLSGQTPPPPPPPPPLAPQPSQPPPQVQPQQQQPQQQLQQPPLLSCNNNFEIQKMNNGSGHGQSGSPMSSSRWPKAEVHALIRLRTTLDAKYQENGPKGPLWEDISAGLQRLGYNRSAKRCKEKWENINKYFKKVKESSKQRREDSKTCPYFHELEVLYKEKSKIHNPVGSSFYNSTTKQPNEMMEPLMVQPEQQWRPPPPVMEEQVKEREGGIEEEEEEDIDDVEEDGDSVEDEERYEIATNKLSSVDTVE 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1339 578 SMART sant 395 457 IPR001005 -
Glsi01g1339 578 SMART sant 45 107 IPR001005 -
Glsi01g1339 578 MobiDBLite consensus disorder prediction 537 561 - -
Glsi01g1339 578 MobiDBLite consensus disorder prediction 518 578 - -
Glsi01g1339 578 Coils Coil 541 561 - -
Glsi01g1339 578 ProSiteProfiles Myb-like domain profile. 391 455 IPR001005 -
Glsi01g1339 578 Gene3D - 399 460 - -
Glsi01g1339 578 Gene3D - 49 110 - -
Glsi01g1339 578 Coils Coil 264 284 - -
Glsi01g1339 578 FunFam Trihelix transcription factor GT-2 49 110 - -
Glsi01g1339 578 Pfam Myb/SANT-like DNA-binding domain 397 482 IPR044822 -
Glsi01g1339 578 Pfam Myb/SANT-like DNA-binding domain 47 133 IPR044822 -
Glsi01g1339 578 MobiDBLite consensus disorder prediction 23 37 - -
Glsi01g1339 578 MobiDBLite consensus disorder prediction 328 400 - -
Glsi01g1339 578 MobiDBLite consensus disorder prediction 1 48 - -
Glsi01g1339 578 ProSiteProfiles Myb-like domain profile. 47 105 IPR001005 -
Glsi01g1339 578 MobiDBLite consensus disorder prediction 140 162 - -
Glsi01g1339 578 FunFam Trihelix transcription factor GT-2 399 460 - -
Glsi01g1339 578 CDD GT1 47 112 - -
Glsi01g1339 578 CDD GT1 397 462 - -
Glsi01g1339 578 PANTHER FI21293P1 25 531 - -
Glsi01g1339 578 MobiDBLite consensus disorder prediction 330 356 - -
Glsi01g1339 578 MobiDBLite consensus disorder prediction 357 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1339 Glsi-ChrGlsi01 67938914 67941293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1339 39 490 Trihelix Transcription Factor Family AT1G76890 52.211 5.34e-145 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi01g1339 Myb_DNA-bind_4 1.4e-20 CL0123