Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1336 ATGTCTTTCCGCAGTATAGTTCGTGATGTCAGGGATGGTTTTGGAAGCTTATCAAGGCGGAGTTTTGAGGTAAGGCTTCCTGGCCATCACAGGAAGTCACATAGTTCAGTCCATGAGTTGCAGGAACAGCCTCCAGTGATACAGAATAGCCGCTGGGGTAGTCTTCCCCCTGAACTTCTCCGTGATGTTATCAGAAGATTGGAAGCAAGTGAGAGCGCGTGGCCTGCTCGTAAGCATGTGGTTGCATGTGCCGCTGTGTGCAAGTCCTGGAGAGAAGTGTGCAAAGAAATTGTCAGCAATCCGGAGTTCTGTGGGAAAATTACTTTTCCTGTTTCCTTGAAGCAGCCTGGACCTAGGGATGGAATGATGCAGTGTTTCATCAAGAGAAACAAATCTAATCTAACATATCACCTCTTCCTTTGCCTTAGTCCTGCCTTGGTTGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAACGGACTAGAAGAACAACTTGCACAGAGTACATTATATCAATGGATGCGGATAACATATCAAGATCTAGTAGTACGTATATTGGAAAACTAAGGTCTAATTTTCTTGGCACTAAATTTATAATATATGATACACAGCCCCCCTATAATAACGCTCAACCGTCTCCACCAGGCCGAAGCCGTAGGATCTATCCTAAAAAGGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGGTCACCTATGAGCTGAATGTGCTTGGTACTAGGGGCCCCCGGAGGATGCACTGCACCATGTGCTCAATCCCTGCATCAGCTCTTGAGCCTGGTGGAGCTGTCCCAGGCCAACCTGAACTTCTTCCCCGCTCACTTGAGGACTCATTCCGGAGTATATCATCATTCTCAAAATCAATTGACAACTCAGCTGATTTCAGCAGCTCTAGGTTCTCGGACATTAATTGGGCCGGCAACGAAGAGGATGAGGGAAAGGAGAGACCACTAATTCTTAAGAACAAGGCACCAAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTCAACTTTAGAGGTAGGGTGACAGTGGCCTCTGTCAAGAATTTTCAGCTTATTGCTGCAACACAGCCTGCAGCTGGTGCTCCAACATCATCTCAGCCTACGCACCCGGATAATGATAAGGTTATTCTTCAGTTTGGCAAGGTAAGCAAGGATATGTTCACAATGGACTACCGATATCCCCTCTCAGCATTCCAGGCTTTTGCCATCTGCTTGACTAGTTTTGACACTAAACTAGCGTGTGAATAG 1275 0.4667 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHHRKSHSSVHELQEQPPVIQNSRWGSLPPELLRDVIRRLEASESAWPARKHVVACAAVCKSWREVCKEIVSNPEFCGKITFPVSLKQPGPRDGMMQCFIKRNKSNLTYHLFLCLSPALVVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQPSPPGRSRRIYPKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCTMCSIPASALEPGGAVPGQPELLPRSLEDSFRSISSFSKSIDNSADFSSSRFSDINWAGNEEDEGKERPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTSSQPTHPDNDKVILQFGKVSKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1336 424 CDD F-box_AtTLP-like 52 96 - -
Glsi01g1336 424 Pfam Tub family 113 419 IPR000007 -
Glsi01g1336 424 FunFam Tubby-like F-box protein 109 424 - -
Glsi01g1336 424 PANTHER TUBBY-RELATED 38 422 - -
Glsi01g1336 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Glsi01g1336 424 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Glsi01g1336 424 Gene3D Tubby Protein; Chain A 111 418 IPR025659 -
Glsi01g1336 424 Pfam F-box domain 53 100 IPR001810 GO:0005515
Glsi01g1336 424 SUPERFAMILY Tubby C-terminal domain-like 101 424 IPR025659 -
Glsi01g1336 424 Gene3D - 47 100 - -
Glsi01g1336 424 SUPERFAMILY F-box domain 44 96 IPR036047 GO:0005515
Glsi01g1336 424 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Glsi01g1336 424 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Glsi01g1336 424 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Glsi01g1336 424 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Glsi01g1336 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Glsi01g1336 424 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Glsi01g1336 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1336 Glsi-ChrGlsi01 67893913 67898005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1336 1 424 TUB Transcription Factor Family AT1G76900 68.271 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Glsi01g1336 Tub 1.4e-116 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi01g1336 01 67893913 67898005 Glsi01g1336 01 67893913 67898005 ECH