Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1323 ATGAGCTGGGTTACCACTAGCCGCAGGAGCAACCTCAGGAGGGGAAGGATGTCGCATAGGAAATTCGAACACCCCAGGCACGGGTCACTGGGATTTCTCCCCAGGAAGCGGGCTTCTCGTCACAGGGGAAAAGTGAAGGCATTCCCCAAGGATGACCCATCCAAGTCACCCAAGCTTACTGCCTTCTTGGGTTACAAGGCAGGCATGACTCACATTGTTAGAGAGGTTGAGAAACCAGGATCAAAGCTTCACAAGAAGGAGACCTGCGAACCTGTTACAATTATAGAGACTCCACCAATGGTAATTGTTGGGGTTGTGGGTTATGTGAAAACTCCACGTGGTCTTAGATCATTGAACACTGTGTGGGCTCAGCATTTGAGTGAGGAGGTGAAGCGTAGGTTCTATAAGAATTGGGCCAAGTCTAAGAAGAAGGCTTTCACAAAGTACTCAAAACAGTTTGATTCAGAAGAAGGGAAGAAGAACGTTCAGGCCCAGCTTGAGAAAATTAAGAAGTATGCAACTGTTGTCCGGGTTTTGGCTCACACTCAGATTAGAAAAATGAAGGGGTTGAAGCAGAAGAAAGCACACCTCATGGAGATTCAAGTCAATGGTGGAACTGTTGCCCAGAAGGTGGACTTTGCTTACAGCTTCTTTGAGAAGCAGGTTCCTGTTGATGCTGTGTTCCAGAAGGATGAGATGATTGACCTCATTGGTGTGACAAAGGGTAAAGGTTATGAAGGTGTTGTGACTCGTTGGGGTGTTACCCGCCTTCCCCGAAAGACTCACAGGGGTCTGAGGAAGGTGGCATGTATTGGTGCCTGGCATCCTGCAAGAGTTTCTTTCACTGTTGCCAGGGCAGGTCAGAATGGATACCACCACCGAACTGAGTTGAACAAGAAGATTTACAGGCTTGGCAAAGCTGGACAAGAATCACACGCTGCTGTCACTGAGTTTGACAGGACTGAGAAAGACATAACCCCAATGGGTGGCTTCCCTCACTATGGTATTGTGAAGGATGACTTTCTGATGATCAAGGGGTGCTGTGTTGGTCCCAAGAAAAGGGTTGTTACATTGCGTCAATCCCTGCTTAAGCAAACTTCTCGTGTTGCTCTTGAGGAGATCAAACTCAAGTTTATTGATACCTCCTCAAAGTTTGGGCATGGTCGCTTCCAGACAACACAGGAGAAGCAGAAGTTCTATGGACGCCTCAAGGCATAA 1218 0.477 MSWVTTSRRSNLRRGRMSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKSPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRSLNTVWAQHLSEEVKRRFYKNWAKSKKKAFTKYSKQFDSEEGKKNVQAQLEKIKKYATVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTVAQKVDFAYSFFEKQVPVDAVFQKDEMIDLIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYRLGKAGQESHAAVTEFDRTEKDITPMGGFPHYGIVKDDFLMIKGCCVGPKKRVVTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1323 405 FunFam 60S ribosomal protein L3 17 90 - -
Glsi01g1323 405 Gene3D - 99 223 - -
Glsi01g1323 405 Pfam Ribosomal protein L3 17 386 IPR000597 GO:0003735|GO:0005840|GO:0006412
Glsi01g1323 405 Gene3D Translation factors 60 401 - -
Glsi01g1323 405 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 17 400 IPR045077 GO:0003735|GO:0005840|GO:0006412
Glsi01g1323 405 SUPERFAMILY Translation proteins 20 386 IPR009000 -
Glsi01g1323 405 ProSitePatterns Ribosomal protein L3 signature. 228 251 IPR019926 -
Glsi01g1323 405 Gene3D Ribosomal protein L3, domain 3 17 290 IPR044892 -
Glsi01g1323 405 FunFam 60S ribosomal protein L3 242 290 - -
Glsi01g1323 405 FunFam Ribosomal protein L3 281 405 - -
Glsi01g1323 405 FunFam 60S ribosomal protein L3 60 176 - -
Glsi01g1323 405 MobiDBLite consensus disorder prediction 1 33 - -
Glsi01g1323 405 FunFam 60S ribosomal protein L3 99 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1323 Glsi-ChrGlsi01 67377937 67384799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1323 17 403 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 88.114 0.0 709