Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1317 ATGTGCTTGCTAACGGTGGCGCATCAACGGGAATCCGGCGAGTTCGTCAGGATCACTGGCCAACAAGGCACCGCAAGCGGCGGCGATGATGGAAGGAGCAGCTCGGCGCCGTCGCAGTCGATAGGACTCCACCAGGAAGGGGAGGTGGTGACGACAATGGCGGCGGGCCCTGTGATTTCAGAGTCTAGCAGAGCTCGAGAGTTCACGGCCATGGTTTCGGCGCTTACGCAGGTGGTTTCAGGTTCTAGACAGAGAAGCGCCGAATGGGTACAAGGAAGTGGTTTTCCTATGACGTCAGCTTTTGGACATGTTCCAATTTCATCTCCTCGTTTGTCTCCTTATTCTCCTTCTTCTTCTGGTTCTGTTCTGGCATCTAGTTCTGGTTCATGGGTTGGTCAGAAAAGAGGGCGTGAGGAAATAGAAGAAGAGGAAAGTGGTACTTCTCGGTTCTATAGAGCCATTAGTGACTTCAGAACACCATCACAAGGCAAGTCGTCTTCAGTGGAGGAGGAAGCTGCAAGTGTTGCAGCCACCGCCACATTGGCGGTGACGGCGGCTGTGACGCCTTCGAGCGAAAGTGGTTCATATGAGGAAACAGGGGAGAGGAGAAGGTACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCGGCTGAGATTCGTGATCCCCACAAAGCAGCGAGAGTTTGGCTGGGTACGTTTGAAACGGCAGAGGCGGCGGCGAGAGCTTACGACGAAGCGGCATTGAGGTTCAGAGGTAACAGAGCGAAACTGAATTTCCCAGAAAATGTTAGAGCAGTTCCACCACCAGTTCAAACTTTTCCGGCGACTGCCACCACCCATTTTCTGCCTTCTCCGCGGCAATTTCAGCAGCCGTTCATGCAGTCGTCCCCTTCGTTTCAGGGTCCGTCTGATTTGGTCAGAGACTATTGGCAATACTCTCAGTTGCTTCAGAGCTCCGGTGACGTCCATGGACAACAACAGCAGCTGCAGCCACAGCTGCCGTCGAGTTTGCTCCAGCAGTGGTTCTATAATTCACAATTGGGTGTTCTTCAATCTCCTTCTTCCTTGGTATCACCATCGTCTTTGTCTTCTTCATCACCAACTGCATTTTCTCCTTCAAGTCAATTTTCCCCTGCTTCACTTCCCCAGTTTTCAGTTTTTGAGTTGGATTCTTGTTTGTTACTATTGTTGTAA 1197 0.5188 MCLLTVAHQRESGEFVRITGQQGTASGGDDGRSSSAPSQSIGLHQEGEVVTTMAAGPVISESSRAREFTAMVSALTQVVSGSRQRSAEWVQGSGFPMTSAFGHVPISSPRLSPYSPSSSGSVLASSSGSWVGQKRGREEIEEEESGTSRFYRAISDFRTPSQGKSSSVEEEAASVAATATLAVTAAVTPSSESGSYEETGERRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNRAKLNFPENVRAVPPPVQTFPATATTHFLPSPRQFQQPFMQSSPSFQGPSDLVRDYWQYSQLLQSSGDVHGQQQQLQPQLPSSLLQQWFYNSQLGVLQSPSSLVSPSSLSSSSPTAFSPSSQFSPASLPQFSVFELDSCLLLLL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1317 398 Pfam AP2 domain 204 253 IPR001471 GO:0003700|GO:0006355
Glsi01g1317 398 PANTHER DNA-BINDING DOMAIN 169 329 IPR044808 GO:0003700|GO:0009873
Glsi01g1317 398 Gene3D AP2/ERF domain 203 263 IPR036955 GO:0003700|GO:0006355
Glsi01g1317 398 ProSiteProfiles AP2/ERF domain profile. 204 261 IPR001471 GO:0003700|GO:0006355
Glsi01g1317 398 FunFam Ethylene-responsive transcription factor 2 203 262 - -
Glsi01g1317 398 CDD AP2 212 263 IPR001471 GO:0003700|GO:0006355
Glsi01g1317 398 MobiDBLite consensus disorder prediction 111 146 - -
Glsi01g1317 398 PRINTS Ethylene responsive element binding protein signature 205 216 IPR001471 GO:0003700|GO:0006355
Glsi01g1317 398 PRINTS Ethylene responsive element binding protein signature 227 243 IPR001471 GO:0003700|GO:0006355
Glsi01g1317 398 MobiDBLite consensus disorder prediction 111 132 - -
Glsi01g1317 398 MobiDBLite consensus disorder prediction 17 47 - -
Glsi01g1317 398 SUPERFAMILY DNA-binding domain 204 262 IPR016177 GO:0003677
Glsi01g1317 398 SMART rav1_2 204 267 IPR001471 GO:0003700|GO:0006355
Glsi01g1317 398 MobiDBLite consensus disorder prediction 17 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1317 Glsi-ChrGlsi01 67311454 67313438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1317 203 281 AP2-EREBP Transcription Factor Family AT2G33710 72.152 3.10e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi01g1317 AP2 4.7e-14 CL0081