Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1314 ATGCAATTCTTGGAAATGGATTCTCATTCCGAAGAGTTGCCTCAATACATACATATAAATCAGAATGAATTTTTGAATAGAAGGCATGTGAAGCAGAAGGAGGAGGATATAGCTATATGTGAATGCAAATATAATGCCAGTGACCCTGATAGTTCTTGTGGGGATAGATGTCTCAATGTATTAACCAGCTCTGAATGCACCCCTGGATACTGCCCCTGTGGTATCTTTTGCAAAAATCAGAGATTTCAGAAGTGTGAATACGCAAAAACAAAGTTGGTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGAACATTAAGGCAGGGCAATTTATCATCGAATACTGTGGAGAAGTAATTTCATGGAAAGAAGCTAAGCGTAGGTCCCAGGCTTATGAAACTCAAGGTCTCAAGGATGCATTTATTATTTTTCTTAATGCCTCTGAATCTATTGATGCAACAAGAAAAGGAAGCCTTGGTAGATTTATAAATCATTCCTGTCAGCCAAATTGTGAGACCCGGAAATGGAATGTCTTGGGGGAGATAAGAGTAGGAATATTTGCAAAACAAGATATTCCTATTGGAGCTGAATTGGCATATGATTATAACTTTGAATGGTTTGGTGGTGCAAAGGTCCGTTGCCTATGTGGTGCAGCCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATTTATGGGAAGATGATGATGAAAGGTACTCTGTTGAGAAAATTCCAGTATATGACTCTGCAGAGGATGAGCCTCCCTCGAAGGTCCTTAGAAACTCAAACACTGAGAATAATGGAAAAGCTGAACACTCCATGGATATTATTATAAAACCTGAGCCACTATCAGAGTCCACTGCTTTTAGTGTGCAGCCACTTGATTCAGTTCCAATGAAGGGCTTACATGTCAATTTGATAAAAACTGAAATAGGAAGTGATGATATGAAATTGTACTCGAGAGATACTCAACAAGCCTTTCTCCAAAAGAATGCAATGATATCACGAATCCGGAGTAATACTGCAGGCCGAAACTATCACATTGAACCTGGATCCATGTCTACTAAAAAATCAAAGACATATAATGGAAGATTTAAAAATATCGTACAGAAGCAAGTTGATGCAAAGTCTGCAGCTGAATGTTTGGCATCAAAGGAAGCACAGGAGGAGATTTTGAGATATGAGGAAATGAAGAATGAGGCTACTTCTGCACTTGATGCTTTATACGATGAAATAAGACCTGCCATTGAAGAGCATGAGAGGGATAGCCAAGATAGTGTATCTACAACTGTAGCAGAGAAGTGGATAGAAGCTTCCTGCTTGAAATTGAAGGCAGAGTTTGACCTTTACACCTCAATTGTCAAAAATATTGCCTGCACTCCTCAAAGGGCACGTGGACAAGCAAAACCTGCTGAAGTTGATAATGAAAGCGAAATTAAGCTATTGACGAATTGA 1482 0.3947 MQFLEMDSHSEELPQYIHINQNEFLNRRHVKQKEEDIAICECKYNASDPDSSCGDRCLNVLTSSECTPGYCPCGIFCKNQRFQKCEYAKTKLVKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEAKRRSQAYETQGLKDAFIIFLNASESIDATRKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPIGAELAYDYNFEWFGGAKVRCLCGAAKCSGFLGAKSRGFQEDTYLWEDDDERYSVEKIPVYDSAEDEPPSKVLRNSNTENNGKAEHSMDIIIKPEPLSESTAFSVQPLDSVPMKGLHVNLIKTEIGSDDMKLYSRDTQQAFLQKNAMISRIRSNTAGRNYHIEPGSMSTKKSKTYNGRFKNIVQKQVDAKSAAECLASKEAQEEILRYEEMKNEATSALDALYDEIRPAIEEHERDSQDSVSTTVAEKWIEASCLKLKAEFDLYTSIVKNIACTPQRARGQAKPAEVDNESEIKLLTN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1314 493 MobiDBLite consensus disorder prediction 258 279 - -
Glsi01g1314 493 Gene3D SET domain 1 242 IPR046341 -
Glsi01g1314 493 ProSiteProfiles Post-SET domain profile. 212 228 IPR003616 -
Glsi01g1314 493 FunFam Histone-lysine N-methyltransferase 2 240 - -
Glsi01g1314 493 PANTHER SET DOMAIN PROTEINS 9 479 - -
Glsi01g1314 493 Coils Coil 393 420 - -
Glsi01g1314 493 ProSiteProfiles AWS domain profile. 35 86 IPR006560 GO:0005634|GO:0042054
Glsi01g1314 493 Pfam SET domain 99 205 IPR001214 GO:0005515
Glsi01g1314 493 SMART PostSET_3 212 228 IPR003616 -
Glsi01g1314 493 MobiDBLite consensus disorder prediction 265 279 - -
Glsi01g1314 493 Pfam AWS domain 48 85 IPR006560 GO:0005634|GO:0042054
Glsi01g1314 493 SMART set_7 88 211 IPR001214 GO:0005515
Glsi01g1314 493 SUPERFAMILY SET domain 13 225 IPR046341 -
Glsi01g1314 493 SMART shorttest3 35 87 IPR006560 GO:0005634|GO:0042054
Glsi01g1314 493 ProSiteProfiles SET domain profile. 83 205 IPR001214 GO:0005515
Glsi01g1314 493 MobiDBLite consensus disorder prediction 474 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1314 Glsi-ChrGlsi01 67215231 67225904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1314 70 227 C2H2 Transcription Factor Family AT2G23740 33.702 6.77e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi01g1314 SET 5e-19 No_clan