Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1293 ATGGGCTGTGTTCAGGCTAAGCCATCGGAGGGTTCAGAAGCTAGGGGCTTAGAGAGGTTGAAATTGGAAAATGGGTATGTTGGAAATGGAGACTTTATTGCCCATCGACGATCCGTGGGTCAAAGATACGAACGCAGGGAGTGTGGTAGGTTACACCAGCGCGAACCCAGAAAGCATCAGATTTGGTCTGGTACTGACAGCGATGAAAGGCAAGGTGGCAGCAATGGCGATGTAGGAGGAAGAGGAAGTGGGGATGTGGAGAAGCTGACTGATAGAGAGGGGAAGAGAAATGCTGTCCATAATAGTGAGAAATTGTCAAGGAAATCTTTTGAGGATGAGATGGTTGATGGGTGGCCCAAATGGTTAGTTGATAATGTTCCTAGAGAAGTATTGTCTGGCTTGGTTCCCAAGAGTGCTGAATCGTACAAAATGATTGATAAGGTAGGACAGGGAACCTACAGCAATGTTTATAAAGCACGCGATCGGGACACTGGAGACATTGTTGCCCTCAAGAAGGTCCGCTTTGATACATCCCACCCTGAAAGCATTAAATTTATGGCAAGAGAAATTATGGTATTACAGAGATTGGATCATCCCAATGTCATAAAACTGAAAGGCTTGGCTACATCAAGAATGCAATACAGTCTTTATCTTGTTTTTGATTTCATGCAATCTGACCTGGCTAGAATTATCTCTCGTCCCGAAGATAGACTAACTGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTGCAGCATTGCCATGATATGGGCATTTTGCATCGAGATATTAAGGGGTCAAACCTTTTGATAGACAAAAATGGGATGCTTAAAATTGCTGATTTTGGGCTTGCCAATTATTTTAGTCCAAACCATAACCAGCCTCTCACAAGCCGGGTTGTGACACTATGGTACAGAGCTCCTGAGCTTTTGTTAGGTGCCACGGATTATGGAGTTGGTATTGATCTATGGAGTGCTGGATGCCTGCTGGCTGAAATGTTTATAGGAATTCCAATTATGCCTGGCAGAACAGAGGTTGAGCAGATTCATAGAATTTTCAGGCTATGTGGGACACCATCAGAGGAGTATTGGAAAAAATTGAAACTTTCTACAACTTTTAGACCTCCAAAGTCTTACAGACCCAGCCTTGTAGAAACTTTTAGGGATCTCCCTCCGTCTTCTTTGGGCCTTTTATGTACTCTTCTCACTCTGGATCCTGCATACCGTGGGACTGCATCTAAAGCTCTTCAAAATCAGTTTTTCTTTGCAAGCCCATTGGCATGTGACCTCTCTGGTCTGCCTGTAATCTACACAGAAGCTGATGAACAAAATCAAGCCAATGAACAGATCAAGCGCATGAATTCTAAAATAAGACGATCTCGTACGCATCTCGAGCGTCAAAGGAAGAATCTGGCATCCAGTAGGCCAATAGAGCACACAGTATCCTCTAAAGAGCAATTGAGCAGGAATGTTGAGACACATGCCCCTAGTGAAGAGCTGGGTAGCACAACCAGTAGTGCCTCATCTAATTTTAACCCTGCTGAGGAAAAGGATCACCGGTCGCCTTTCTTTCTTTCTCCGTACGTGTCTTTAGATCAAAAACTGTTGCTCCAAAGCCATCACCATGCTAATGGTGGGGAAAACATCAAGAACCTTCCTCCATTACCCAAGTTAAAACTACATGCAACTAAGAAAGACGACAACAGCTACAGATCACAGCAGGTCCACAGGTGTGCTTCCTCCAGAGAATTTAGAAACTCAAAACAGGGGGAGCATTTGGTCTTTGAAATTGATGATTAG 1809 0.44 MGCVQAKPSEGSEARGLERLKLENGYVGNGDFIAHRRSVGQRYERRECGRLHQREPRKHQIWSGTDSDERQGGSNGDVGGRGSGDVEKLTDREGKRNAVHNSEKLSRKSFEDEMVDGWPKWLVDNVPREVLSGLVPKSAESYKMIDKVGQGTYSNVYKARDRDTGDIVALKKVRFDTSHPESIKFMAREIMVLQRLDHPNVIKLKGLATSRMQYSLYLVFDFMQSDLARIISRPEDRLTEPQVKCYMHQLLSGLQHCHDMGILHRDIKGSNLLIDKNGMLKIADFGLANYFSPNHNQPLTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFIGIPIMPGRTEVEQIHRIFRLCGTPSEEYWKKLKLSTTFRPPKSYRPSLVETFRDLPPSSLGLLCTLLTLDPAYRGTASKALQNQFFFASPLACDLSGLPVIYTEADEQNQANEQIKRMNSKIRRSRTHLERQRKNLASSRPIEHTVSSKEQLSRNVETHAPSEELGSTTSSASSNFNPAEEKDHRSPFFLSPYVSLDQKLLLQSHHHANGGENIKNLPPLPKLKLHATKKDDNSYRSQQVHRCASSREFRNSKQGEHLVFEIDD 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1293 602 MobiDBLite consensus disorder prediction 47 103 - -
Glsi01g1293 602 MobiDBLite consensus disorder prediction 449 521 - -
Glsi01g1293 602 MobiDBLite consensus disorder prediction 565 586 - -
Glsi01g1293 602 ProSitePatterns Protein kinases ATP-binding region signature. 148 171 IPR017441 GO:0005524
Glsi01g1293 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Glsi01g1293 602 FunFam Putative serine/threonine-protein kinase 225 462 - -
Glsi01g1293 602 MobiDBLite consensus disorder prediction 477 515 - -
Glsi01g1293 602 SUPERFAMILY Protein kinase-like (PK-like) 137 427 IPR011009 -
Glsi01g1293 602 Pfam Protein kinase domain 142 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1293 602 Coils Coil 453 473 - -
Glsi01g1293 602 FunFam probable serine/threonine-protein kinase At1g54610 129 224 - -
Glsi01g1293 602 PANTHER CELL DIVISION PROTEIN KINASE 140 429 - -
Glsi01g1293 602 ProSiteProfiles Protein kinase domain profile. 142 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1293 602 Gene3D Phosphorylase Kinase; domain 1 132 224 - -
Glsi01g1293 602 Gene3D Transferase(Phosphotransferase) domain 1 225 479 - -
Glsi01g1293 602 SMART serkin_6 142 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi01g1293 602 MobiDBLite consensus disorder prediction 47 65 - -
Glsi01g1293 602 CDD STKc_CDK9_like 142 424 - -
Glsi01g1293 602 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1293 Glsi-ChrGlsi01 66739214 66747166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1293 137 486 Core Cell Cycle Gene Families AT5G10270 42.703 3.36e-95 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi01g1293 Pkinase 1e-67 CL0016