Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1285 ATGGGTTTGCAAACAAGTAACCTCTTCATGTTGCTACTATCTGTTATAGTCAGTTCTGCACATTCAATGTATTATTGTTCCAATTTTCTTTTATGGCCCAGCATCACATCCCTTCTTGCGCAAATCGTACAAAGGAGACCAAAAATAAGTTTCAAGCAAGCTACCAAAGGTGCTCTCTATGCTTCTTTAGTGGCAAACGAGGATTTTCAACACATTCTGCGTGTGCTGAACACTAACGTAGATGGGAAGCAGAAGATACAGTTTGCAATTACCTCAATCAAAGGTATTGGCAGGAGATTCGCCAACATTTGCTGCAAGAAGGCCGATATTGACATGAACAAGAGAGCTGGAGAACTTACTGCCGCGGAGCTCGATCAACTCATGGTGGTTGTTGCCAACCCTCGACAGTTCAAGATCCCAGACTGGTTTTTGAACAGGAAGAAGGATTACAAGGATGGGAAATATTCCCAGGTGGTATCTAATGCATTGGACATGAAGTTGAGGGATGATTTGGAGAGATTGAAGAAAATCAGAAATCACCGCGGTTTGAGACACTACTGGGGCCTTCGTGTTCGTGGCCAGCATACCAAGACTACTGGCCGCAGGGGAAAGACTGTTGGTGTCTCTAAGAAGCGTTGA 639 0.4429 MGLQTSNLFMLLLSVIVSSAHSMYYCSNFLLWPSITSLLAQIVQRRPKISFKQATKGALYASLVANEDFQHILRVLNTNVDGKQKIQFAITSIKGIGRRFANICCKKADIDMNKRAGELTAAELDQLMVVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1285 212 ProSitePatterns Ribosomal protein S13 signature. 181 194 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi01g1285 212 ProSiteProfiles Ribosomal protein S13 family profile. 75 205 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi01g1285 212 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 62 212 - -
Glsi01g1285 212 FunFam 40S ribosomal protein S18 61 140 - -
Glsi01g1285 212 Pfam Ribosomal protein S13/S18 74 202 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi01g1285 212 Hamap 30S ribosomal protein S13 [rpsM]. 72 212 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Glsi01g1285 212 FunFam 40S ribosomal protein S18 152 203 - -
Glsi01g1285 212 Gene3D 30s ribosomal protein s13, domain 2 152 202 IPR027437 -
Glsi01g1285 212 Gene3D - 61 140 - -
Glsi01g1285 212 SUPERFAMILY S13-like H2TH domain 73 208 IPR010979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1285 Glsi-ChrGlsi01 66524579 66527909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1285 62 212 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 92.053 4.09e-104 295