Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1284 ATGCCAGAACCGGAGCCGGTGACGCCGACCGCAGCGTCGGCACCAACGACGCCGGGGACTCCGACTCCGCTGTTCACGTCGCTGCGGGTGGATTCTCTGTCTTACGACCGCGATTCGATGCCGCGGTGCAAGTGCCTGCCCACGAAGGCCCATACGTGCTTCACTGATTTCTCAATTCCCAATGTGTCTCTCACGCGCAAGATAGGAGCAGAGTTCGTGGGAACCTTCATATTGATGTTTGCAGCATCAGCAGGGCCCATAATAAACCAGAAGTACAGCGGAGCAGAGACTCTGATTGGAAACGCCGCGTGCGCAGGACTAGCGGTGATGATCATAATCCTCTCGACTGGCCACATTTCCGGGGCGCACCTGAACCCCTCCCTGACCATTGCCTTCGCGGCGTTTCGCCATTTCCCCTGGGTCCATGTCCCTGGCTATATTGCAGCTCAGGTTTCTGCCTCCATTTGCGCCTCCTTCGCTCTCAAGGGTGTGTTTCATCCTTACATGTCTGGGGGTGTCACTGTCCCTTCTGGGACTATTGGCCAGGCTTTTGCTCTAGAGTTCATCATCACTTTCATTCTCCTCTTTGTCGTCACTGCTGTTGCCACTGATACTCGTGCGGTTGGAGAATTGGCAGGTATTGCTGTTGGAGCTACAGTTTTGCTCAACATTCTCATATCAGGGCCATTAAGTGGCGGTTCAATGAACCCGGTTCGCACCTTGGGTCCAGCCGTAGCAGCAGGAAATTACAAGGACTTGTGGATATACTTGGTTGCACCCACGCTTGGAGCTTTGGCTGGTGCAGGTGTCTACACTCTCGTCAAACTCCGGGACCACGAAGCTGATCCGCCGCGCCCTGTTAGGAGCTTTCGGAGCTTCCGTGGTTAG 888 0.5529 MPEPEPVTPTAASAPTTPGTPTPLFTSLRVDSLSYDRDSMPRCKCLPTKAHTCFTDFSIPNVSLTRKIGAEFVGTFILMFAASAGPIINQKYSGAETLIGNAACAGLAVMIIILSTGHISGAHLNPSLTIAFAAFRHFPWVHVPGYIAAQVSASICASFALKGVFHPYMSGGVTVPSGTIGQAFALEFIITFILLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPLSGGSMNPVRTLGPAVAAGNYKDLWIYLVAPTLGALAGAGVYTLVKLRDHEADPPRPVRSFRSFRG 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1284 295 FunFam Aquaporin NIP2-1 54 286 - -
Glsi01g1284 295 ProSitePatterns MIP family signature. 123 131 IPR022357 -
Glsi01g1284 295 PRINTS Major intrinsic protein family signature 142 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g1284 295 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g1284 295 PRINTS Major intrinsic protein family signature 105 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g1284 295 PRINTS Major intrinsic protein family signature 66 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g1284 295 PRINTS Major intrinsic protein family signature 254 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g1284 295 PRINTS Major intrinsic protein family signature 186 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi01g1284 295 MobiDBLite consensus disorder prediction 1 22 - -
Glsi01g1284 295 Gene3D Glycerol uptake facilitator protein. 44 284 IPR023271 -
Glsi01g1284 295 SUPERFAMILY Aquaporin-like 62 282 IPR023271 -
Glsi01g1284 295 PANTHER AQUAPORIN NIP2-1 52 279 IPR034294 -
Glsi01g1284 295 Pfam Major intrinsic protein 61 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1284 Glsi-ChrGlsi01 66503022 66510538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1284 24 291 Major Intrinsic Protein MIP AT4G10380 80.727 2.12e-160 447