Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1280 ATGACACGGCATGCAGCTCTAGTCTCATCCTCTTTCACCTGTGAATGGACTTATGATGTCTTTCTCAGTTTTAGAGGTGAAGATACCCGCACCAATTTTACTGGCAATCTGTACAACTCTCTGCATCAAAAGGGAATCCACACCTTCATGGATGATGAGGGGCTCCGAAGAGGGGAAGAAATCACACCAGCTCTTCTCAAAGCCATCCAAGAATCTAGGATTGCCATCGTTGTTTTCTCTAAAAACTATGCATCCTCAACATTTTGTCTAGATGAACTTGTCAATATCCTTCAGCACTTGAAGGGTGAAGGTCGGTTGGTTTGGCCGATATTTTACGATGTGGATCCATCGGAAGTGCGACATCAAAGTGGGAGTTATGGCATGGCATTAGCAAAACACGAGGAAAGGTTCCAGGACAACAAGGACATGATGCAAAAATGGAGGGAGGCTTTACATGAGGCAGCTAACTTGTCTGGTTGGCATTTCCAACATGGGTCTGAATGTGAATATAAGTTTATACGAAGGATCATTGAGGAGGTATCCAAAAAGATCAACCACACTCCTTTGCATATTGGTGATTACCCGGTTGGACTAGAATCTTCTGTGCAAACCGTAACCTCACTTTTGGGACTTGGCTCCAATGAGGAAGTTAGTATGGTGGGTATTTATGGAATTGGTGGAATTGGTAAAACAACAATTGCACGTGCTGTGTTTAACTCAATTGCTGATCAATTTGAAGGCTTGTGTTTTCTTTCTGATATTAGAGAGAAGGCAGTTAATAAGCATGGACTTGTACTACTCCAAGAAACACTACTTTATGAAATAGTTGGAGAAAATGATATCAAGCTTGGAGATATCAATAAAGGAATTCCAATTATAAAAAGAAGGCTCCATCGAAAGAAGGTTCTTTTGATTCTTGACGATGTTGATAAGCTGAAACAGTTACAGGCAATTGCTGGAGGACATGATTGGTTTGGTTCTGGTAGCAGGATCATTATCACAACAAGAGACAAACATTTGCTAACTATTCATGGGGTGGTAAAATTATATGAGGTGAAAGAGCTAAATGTTAGTAAATCTCTTGAATTGTTTAGTTGGAATGCCTTTAAGAATAACAAAGTTGATCCACGTTATGTGGATATTTCAAACCGTGTAGTCTCTTATGCAAGTGGCCTTCCCTTGGCTTTGGAAGTAATAGGTTCTAACTTGTTTGGTAAAAGATTAGAGGAATGGAATTCTCTGCTGGATAAGTATGAAAGAATTCCCAATAAAGAGGTCCATGAAATACTTAAAGTAAGCTATGATAGTTTGGAAGAAGATGAGAAGGAAATTTTCCTAGACATTGCCTGTTTCTTCAATAAATACAAAATGAGATATGTCAAAGAAATGCTATATGCACATGGTTTCCACGCAGAAATTGGTATCCGAGTTTTGATTGACAAATCTCTTGTCAAGATTGATGGTTTGAATTGTGTGAGAATGCATGATTTGATTCAAGGCATGGGTAGAGAAATTGTTAGACAGGAATCAATATTTGAGCCTGGCAAACGCAGTAGATTGTGGTTTGATGAGGAAATTGTTCGTGTTTTAGAAGAAAATACGGGAACTGATAAAGTTGAAGTCATTATGCTGAACATGTTTCAGTCTTTATATTTTATGGATTTTGAAGATTGTAAATTCTTAACACAAGTACCTAACCTATCTGGACTCCCAAACTTAGGGGCATTGTGTCTTGATAATTGCACAAATTTAATTAGAGTTCATGATTCAGTTGGATTTCTTGATAAACTCCTATTGTTGAGTGCCCGAGGATGCATCCAACTCAGCATTTTGACATCCTGCATCAAATTGACTTCTCTTGAGACTCTGGATCTCAGGGGATGCTCAAGTCTTGAGATTTTCCCAGAAGTGTTGGAAACGATGGAAAATATAAGAGAAGTTTATTTGGACCAGACTGCCCTAAAAGAATTGCCATTTTCAATTGGAAATCTTATTGGACTCGAGCGGCTATACCTGAGGCAATGCACAGGGCTTAAGCAGCTAACAAGCATAGTAATATTACCTAAACTTAAGATAATAATGGCTTATGGGAGTAGAGGATTTCAATTATGTGGAGGGTACGAAAATGAAGAAACAATGAGCTCATCAGTAGTGTCTTCAGGTGCGATGTATCTTTATTCTGTGACAAAAAATTTCCCTTCTCAATTTCAATTGAGTTGCCTTGATGTGTATTGTATGTATATAGGTCACAATAATATCATAGAGGTATGCATTCCTTTGATTAATGCCAGAAGCCTTGTACTTGACGCCCTCGAACAAAATCCTTTGGGGGACCCTGTATTTCATGGTGCAGTATCTTTTGATTTCAGGCACAGGAAATCATCAGTGTCTTTCTGGTTCCGTGAAAGGTTCCCACGCATAGCTTTATGCATGATTGGGGAACCTAGCACAAGAAATGACAATCACAATTTGGTGTTGGACATTAAGATCAACGTGTTTATCAATGGTGCTAAACAGCTTAGTTGTTCATGTAATTTTATATTTTCTACAGAAGACATGATACGACATATATTTTTTTATGACCTAAAATGCAAACCCGAGAGATTGTTTTCAGAGCATGAATGGAATCATGTTCAGGTTTCATGTGAGTTGAAATATCACAATACAAATGGTCCTCACTGGAAAATTCCCAACCACAACGGGATCCGTACAGGGACTATAGAATTGACTGGAATTCATGTCTACAAGGAAGAGAACAGCAGCGAGGAGGATATTCGGTTCACAAATCCTAATATCTCTGGCTCAAATGATGGATTGGTTCTTGCAGGGGAAATCAGAGAACTGATTGAAATTCTTGGGAGGGTGTTGGCAGATTGGATGCACAAAAAGTTGCTTCCTACTATAGAGATGTTTCAGTCTTTATATTTTATGGATTTTGAAGATTGTAAATTCTTAACACAAGTACCTAACCTATCTGGACTCCCAAACTTAGGGGCATTGTGTCTTGATAATTGCACAAATTTAATTAGAGTTCATGATTCAGTTGGATTTCTTGATAAACTCCTATTGTTGAGTGCCCGAGGATGCATCCAACTCAGCATTTTGACATCCTGCATCAAATTGACTTCTCTTGAGACTCTGGATCTCAGGGGATGCTCAAGTCTTGAGATTTTCCCAGAAGTGTTGGAAACGATGGAAAATATAAGAGAAGTTTATTTGGACCAGACTGCCCTAAAAGAATTGCCATTTTCAATTGGAAATCTTATTGGACTCGAGCGGCTATACCTGAGGCAATGCACAGGGCTTAAGCAGCTAACAAGCATAGTAATATTACCTAAACTTAAGATAATAATGGCTTATGGGAGTAGAGGATTTCAATTATGTGGAGGGTACGAAAATGAAGAAACAATGAGCTCATCAGTAGTGTCTTCAGGTCACAATAATATCATAGAGGTATGCATTCCTTTGATTAATGCCAGAAGCCTTGTACTTGACGCCCTCGAACAAAATCCTTTGGGGGACCCTGTATTTCATGGTGCAGTATCTTTTGATTTCAGGCACAGGAAATCATCAGTGTCTTTCTGGTTCCGTGAAAGGTTCCCACGCATAGCTTTATGCATGATTGGGGAACCTAGCACAAGAAATGACAATCACAATTTGGTGTTGGACATTAAGATCAACGTGTTTATCAATGGTGCTAAACAGCTTAGTTGTTCATGGACTATAGAATTGACTGGAATTCATGTCTACAAGGAAGAGAACAGCAGCGAGGAGGATATTCGGTTCACAAATCCTAATATCTCTGGCTCAAATGATGGATTGGTTCTTGCAGGGGAAATCAGAGAACTGATTGAAATTCTTGGGAGGGTGTTGGCAGATTGGATGCACAAAAAGTTGCTTCCTACTATAGAGGTTAGGTTCCACTGCCTCATCAATGGCCATGAACATATACTTTCAAATTTGCTTCAGTTGAATGATTGCAACAGGGCATGCATGCATGGGTGTCTCATCTCTGAGTTCATGTTCAGATTCCCGAAGACTAGCTTTCCAGAGTGTGATTGA 4062 0.3914 MTRHAALVSSSFTCEWTYDVFLSFRGEDTRTNFTGNLYNSLHQKGIHTFMDDEGLRRGEEITPALLKAIQESRIAIVVFSKNYASSTFCLDELVNILQHLKGEGRLVWPIFYDVDPSEVRHQSGSYGMALAKHEERFQDNKDMMQKWREALHEAANLSGWHFQHGSECEYKFIRRIIEEVSKKINHTPLHIGDYPVGLESSVQTVTSLLGLGSNEEVSMVGIYGIGGIGKTTIARAVFNSIADQFEGLCFLSDIREKAVNKHGLVLLQETLLYEIVGENDIKLGDINKGIPIIKRRLHRKKVLLILDDVDKLKQLQAIAGGHDWFGSGSRIIITTRDKHLLTIHGVVKLYEVKELNVSKSLELFSWNAFKNNKVDPRYVDISNRVVSYASGLPLALEVIGSNLFGKRLEEWNSLLDKYERIPNKEVHEILKVSYDSLEEDEKEIFLDIACFFNKYKMRYVKEMLYAHGFHAEIGIRVLIDKSLVKIDGLNCVRMHDLIQGMGREIVRQESIFEPGKRSRLWFDEEIVRVLEENTGTDKVEVIMLNMFQSLYFMDFEDCKFLTQVPNLSGLPNLGALCLDNCTNLIRVHDSVGFLDKLLLLSARGCIQLSILTSCIKLTSLETLDLRGCSSLEIFPEVLETMENIREVYLDQTALKELPFSIGNLIGLERLYLRQCTGLKQLTSIVILPKLKIIMAYGSRGFQLCGGYENEETMSSSVVSSGAMYLYSVTKNFPSQFQLSCLDVYCMYIGHNNIIEVCIPLINARSLVLDALEQNPLGDPVFHGAVSFDFRHRKSSVSFWFRERFPRIALCMIGEPSTRNDNHNLVLDIKINVFINGAKQLSCSCNFIFSTEDMIRHIFFYDLKCKPERLFSEHEWNHVQVSCELKYHNTNGPHWKIPNHNGIRTGTIELTGIHVYKEENSSEEDIRFTNPNISGSNDGLVLAGEIRELIEILGRVLADWMHKKLLPTIEMFQSLYFMDFEDCKFLTQVPNLSGLPNLGALCLDNCTNLIRVHDSVGFLDKLLLLSARGCIQLSILTSCIKLTSLETLDLRGCSSLEIFPEVLETMENIREVYLDQTALKELPFSIGNLIGLERLYLRQCTGLKQLTSIVILPKLKIIMAYGSRGFQLCGGYENEETMSSSVVSSGHNNIIEVCIPLINARSLVLDALEQNPLGDPVFHGAVSFDFRHRKSSVSFWFRERFPRIALCMIGEPSTRNDNHNLVLDIKINVFINGAKQLSCSWTIELTGIHVYKEENSSEEDIRFTNPNISGSNDGLVLAGEIRELIEILGRVLADWMHKKLLPTIEVRFHCLINGHEHILSNLLQLNDCNRACMHGCLISEFMFRFPKTSFPECD 1353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1280 1353 Gene3D - 354 438 IPR042197 -
Glsi01g1280 1353 SMART AAA_5 216 355 IPR003593 GO:0016887
Glsi01g1280 1353 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Glsi01g1280 1353 Gene3D Ribonuclease Inhibitor 956 1119 IPR032675 -
Glsi01g1280 1353 Gene3D Ribonuclease Inhibitor 540 698 IPR032675 -
Glsi01g1280 1353 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Glsi01g1280 1353 SUPERFAMILY L domain-like 963 1172 - -
Glsi01g1280 1353 SUPERFAMILY L domain-like 542 768 - -
Glsi01g1280 1353 PRINTS Disease resistance protein signature 219 234 - -
Glsi01g1280 1353 PRINTS Disease resistance protein signature 389 403 - -
Glsi01g1280 1353 PRINTS Disease resistance protein signature 296 310 - -
Glsi01g1280 1353 PRINTS Disease resistance protein signature 615 631 - -
Glsi01g1280 1353 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 684 IPR044974 GO:0006952
Glsi01g1280 1353 Pfam NB-ARC domain 203 437 IPR002182 GO:0043531
Glsi01g1280 1353 ProSiteProfiles TIR domain profile. 16 180 IPR000157 GO:0007165
Glsi01g1280 1353 Gene3D - 181 347 IPR027417 -
Glsi01g1280 1353 Pfam TIR domain 18 188 IPR000157 GO:0007165
Glsi01g1280 1353 SMART till_3 17 157 IPR000157 GO:0007165
Glsi01g1280 1353 Gene3D - 14 180 IPR035897 -
Glsi01g1280 1353 Coils Coil 130 150 - -
Glsi01g1280 1353 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Glsi01g1280 1353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 448 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1280 Glsi-ChrGlsi01 66355737 66384271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1280 12 697 WRKY Transcription Factor Family AT4G12020 30.038 7.09e-70 257