Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1274 ATGAGAAGAGGGGGCAGAGAGCTTCTTCGCCTCTCTTCTTCTCTATGCTCGCCATTTAAACTTAACCCATTTACGAAATTACCATCACCTACTTGCGCTTTTCAACGGTTTGGCCCTGTCTCGACCTCTTTTTTCTCCTCTTCTACTTCTACCACCCCAATCCCTACCGGTGAAGAGGAGAAGACATCATCAAAGTCCCAAAGGGACTTACTGCTTTTAGAAAAGTTTAGACTTAGAAAACTTAAAGGGTCATCTAAAACCTTGCAGGGTAGCCCCCAAGCATCAAGTTCTACTGTAGAGAAGGTAAATGAAAAGTCCTTGAAGAATGAGGGTGATACCACTGAGGTAGTGACCAGTTTTAACGAGTTGGGTCTAAGTGAGGAGCTTATTGAGGTTTTGGAGAAAATTGGTGTTTTTGTTCCTAGTGAGATTCAATGTGTGGGGATTCCTGCTGTTTTGGAAGGGAAGAGTGTGTTGTTGAGTTCAGTATCTGGGCCTGACAGGAGTTTGGCCTACTTGTTGCCTCTTATTCAGTTGCTGAGACGGGATGCCAAGTTATCTGGTTCAAAGTCACAGCATCCTCGAGCCATTGTGCTTTGTGCCACAGAGGACAAAGCTGAACAGTGCTTTAATGCTGCAAAATATATCATCCATCATGCAGAATCAAAATCTACGAAGGATGGCGCTTCCCCAGATAATGAGCAGTCAAAAGTCTCAATTGGCCTCGTAATTGGACCTCCTAGTGAGATTCTTCAATACATTGAAGAGGGGAGTGTTATTCCTGCTGAAATCAGATATTTGGTTTTGGATGAGGCAGATTTCATGCTTTACAGTGGCCTCAGCCTTGAGATTCACAAGATTGTCAAACCATTGCAAGATTATGCTTCAAAATCCACTACCAAAGGATTGCAAACTGTTTTGGTCACTTCAACGATAACTGAAATTTTGGGTGAACAGTCTCCTATTATAAAGCATCTTGAGCATGACCATGCAGGACAAGTTTCTGCTATGTTGTTAGAAATGGATCCAACAGAAGTTTATCATCTCACAGAGTCCCTGGATGCTCTAAGGAAAAAAATGACAGAGGCCATGGATTCCCTTCTGTAA 1107 0.4282 MRRGGRELLRLSSSLCSPFKLNPFTKLPSPTCAFQRFGPVSTSFFSSSTSTTPIPTGEEEKTSSKSQRDLLLLEKFRLRKLKGSSKTLQGSPQASSSTVEKVNEKSLKNEGDTTEVVTSFNELGLSEELIEVLEKIGVFVPSEIQCVGIPAVLEGKSVLLSSVSGPDRSLAYLLPLIQLLRRDAKLSGSKSQHPRAIVLCATEDKAEQCFNAAKYIIHHAESKSTKDGASPDNEQSKVSIGLVIGPPSEILQYIEEGSVIPAEIRYLVLDEADFMLYSGLSLEIHKIVKPLQDYASKSTTKGLQTVLVTSTITEILGEQSPIIKHLEHDHAGQVSAMLLEMDPTEVYHLTESLDALRKKMTEAMDSLL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1274 368 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 56 314 - -
Glsi01g1274 368 MobiDBLite consensus disorder prediction 44 67 - -
Glsi01g1274 368 MobiDBLite consensus disorder prediction 84 102 - -
Glsi01g1274 368 Gene3D - 319 368 - -
Glsi01g1274 368 MobiDBLite consensus disorder prediction 83 113 - -
Glsi01g1274 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 315 IPR027417 -
Glsi01g1274 368 Pfam DEAD/DEAH box helicase 143 313 IPR011545 GO:0003676|GO:0005524
Glsi01g1274 368 Gene3D - 82 318 IPR027417 -
Glsi01g1274 368 SMART ultradead3 137 335 IPR014001 -
Glsi01g1274 368 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 295 368 IPR002004 GO:0003723
Glsi01g1274 368 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 146 IPR014014 GO:0003724
Glsi01g1274 368 Pfam Poly-adenylate binding protein, unique domain 314 365 IPR002004 GO:0003723
Glsi01g1274 368 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 314 IPR014001 -
Glsi01g1274 368 SMART poly_2 308 367 IPR002004 GO:0003723
Glsi01g1274 368 MobiDBLite consensus disorder prediction 44 60 - -
Glsi01g1274 368 SUPERFAMILY PABC (PABP) domain 313 365 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1274 Glsi-ChrGlsi01 66168189 66171096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1274 112 312 Eukaryotic Initiation Factors Gene Family AT3G19760 26.341 9.08e-12 63.9