Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi01g1271 ATGGCGGCGACGATTTCTGCACCGTTGGCTCAGCCCACTGCTCCGGCATCACCAGCGGCATTGCCCGCAGGAGCGTTCGCAAATTTGTCGCTGTACGTGGGTGATCTTGACACCAATGTGAATGAGGGGCAGCTCTATGATCTGTTCAGCCAAGTGGCTCAGGTTGTGTCCATCAGGGTTTGCAGGGATCAGAACAGGCGATCCTCTCTCGGTTACGCTTATGTCAACTTTGCCAATTCTCAGGATGCGGCTAATGCCATGGAACTTCTGAACTTTACCCCTTTAAATGGGAAACCCATTCGTATTATGTTCTCTCATCGAGATCCGAGCATTCGGAAAAGTGGATATGCTAATGTGTTCATTAAGAACCTGGACACATCGATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGGACTGTACTTTCCTGCAAGGTAGCTGTTGATAACTGTGGTCAGTCAAAAGGGTACGGTTTTGTACAATTTGACAATGATGAGTCTGCACAAAATGCCATCAAGCAGTTGAATGGTATGTTGATAAATGATAAACAAGTCTATGTTGGACTCTTTGTTCGGCACCAGGAAAGGTCTCAAGCAAATGGATCACCAAAGTTCACTAATGTGTATGTGAAAAATTTTTCTGAAACATATACTGATGAGAACCTTAAGCAGATGTTTGCCCCCTTTGGTGCAATAACTAGTGCGGTTGTCATGAAAGATGCAAATGGGAAGTCTAGATGCTTTGGTTTTGTTAATTTCCAGAGCCCAGATGCAGCAGCTGCTGCAGTTGAGAGCTTAAATGGAACTACTACTGTCAATGATGACAAGGTTCTATATGTGGGGAGAGCCCAGAGGAAGGCAGAAAGAGAGGCAGAGTTGAAAGCCAAATTTGAGCAGGAAAGAATTAGTAGATATGAGAAATTACAAGGAGCTAATCTATACTTGAAAAATCTTGATGACAGCATCAATGATGAAAAACTGAAGGAGTTATTTTCTGAGTTTGGAACAATAACATCATGCAAGGTCATGCTTGATTCAAATGGACATAGCAAGGGTTCTGGTTTTGTGGCCTTCTCAAGTCCTGAGGAAGCAAGTAAAGCTCTGAATGAAATGAATGGAAAGATGATTGGTCGAAAACCTCTTTATGTTGCTGTGGCCCAGCGCAAAGAAGAAAGGAAAGCCTTGCAGGCTCATTTTGCTCAAATTCGAGCTCCTGGTGGAATTGCACCTCTGCCTGCTGGAATTCCTGGATATCATCCAGGGGCACCTAGACTTCCCCCTCAGCAATTATATTATGGTCAGGGCACTCATGGTCTGATACCACCTCAGCCAGCTGGATTTGGTTTCCAGCAGCAACTCTTGCCAGGAATGCGTCCAGGTGTTGCTCCAAATTTCATTATGCCTTACCAACTTCAGAGACAAGGTCAGCCCGGGCAAAGGATGGGTGTTAGACGGGGTGGAAATCTCCAACATGTGCAGCAGAATCAGATGCTACATCGTAACTCCAACCAAGGGTTTAGATATATGGGCAATAATCGGAATGGCATGGACCCATCTGTAGTTCCCCAAGGTCTAGTGGGTCCAATGATGCCATTGCCCTTTGATGTTTCCGGGGTTACTTCAGCTCCCATTGATAATCAACGACCCGGCGCCCTGTCTACAACACTTACCTCAGCTTTGGCTTCTGCTACCCCAGAAAATCAGCGTATGATGCTGGGCGAACATCTCTATCCCCTTGTAGAGCGTCTTGCACCAAACCATACGGCTAAGGTAACAGGGATGTTGCTTGAAATGGACCAATCCGAGGTCATCCATCTCATTGAATCTCCTGAGGACTTGAAGATAAAGGTGTCGGAGGCAATGCAAGTCCTTCATGAAGCTGCATCGGGTTCCGAAGTTAATGATCAGCTTGGCTCGTTGTCACTGAATGAATGA 1941 0.4575 MAATISAPLAQPTAPASPAALPAGAFANLSLYVGDLDTNVNEGQLYDLFSQVAQVVSIRVCRDQNRRSSLGYAYVNFANSQDAANAMELLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGTVLSCKVAVDNCGQSKGYGFVQFDNDESAQNAIKQLNGMLINDKQVYVGLFVRHQERSQANGSPKFTNVYVKNFSETYTDENLKQMFAPFGAITSAVVMKDANGKSRCFGFVNFQSPDAAAAAVESLNGTTTVNDDKVLYVGRAQRKAEREAELKAKFEQERISRYEKLQGANLYLKNLDDSINDEKLKELFSEFGTITSCKVMLDSNGHSKGSGFVAFSSPEEASKALNEMNGKMIGRKPLYVAVAQRKEERKALQAHFAQIRAPGGIAPLPAGIPGYHPGAPRLPPQQLYYGQGTHGLIPPQPAGFGFQQQLLPGMRPGVAPNFIMPYQLQRQGQPGQRMGVRRGGNLQHVQQNQMLHRNSNQGFRYMGNNRNGMDPSVVPQGLVGPMMPLPFDVSGVTSAPIDNQRPGALSTTLTSALASATPENQRMMLGEHLYPLVERLAPNHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAASGSEVNDQLGSLSLNE 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi01g1271 646 CDD RRM2_I_PABPs 115 190 IPR045305 -
Glsi01g1271 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Glsi01g1271 646 FunFam Polyadenylate-binding protein 550 632 - -
Glsi01g1271 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Glsi01g1271 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 276 IPR000504 GO:0003723
Glsi01g1271 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Glsi01g1271 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Glsi01g1271 646 CDD RRM4_I_PABPs 312 390 - -
Glsi01g1271 646 FunFam Polyadenylate-binding protein 198 295 - -
Glsi01g1271 646 SMART rrm2_1 118 190 IPR003954 GO:0003676
Glsi01g1271 646 SMART rrm2_1 30 103 IPR003954 GO:0003676
Glsi01g1271 646 SMART rrm2_1 314 386 IPR003954 GO:0003676
Glsi01g1271 646 SMART rrm2_1 209 283 IPR003954 GO:0003676
Glsi01g1271 646 FunFam Polyadenylate-binding protein 296 400 - -
Glsi01g1271 646 Gene3D - 553 631 - -
Glsi01g1271 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Glsi01g1271 646 FunFam Polyadenylate-binding protein 22 117 - -
Glsi01g1271 646 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 626 IPR006515 GO:0003723
Glsi01g1271 646 Gene3D - 299 403 IPR012677 -
Glsi01g1271 646 Gene3D - 193 298 IPR012677 -
Glsi01g1271 646 SUPERFAMILY RNA-binding domain, RBD 199 293 IPR035979 GO:0003676
Glsi01g1271 646 Gene3D - 118 191 IPR012677 -
Glsi01g1271 646 SMART poly_2 566 629 IPR002004 GO:0003723
Glsi01g1271 646 SMART rrm1_1 314 386 IPR000504 GO:0003723
Glsi01g1271 646 SMART rrm1_1 30 103 IPR000504 GO:0003723
Glsi01g1271 646 SMART rrm1_1 118 190 IPR000504 GO:0003723
Glsi01g1271 646 SMART rrm1_1 209 283 IPR000504 GO:0003723
Glsi01g1271 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 287 IPR000504 GO:0003723
Glsi01g1271 646 Gene3D - 27 117 IPR012677 -
Glsi01g1271 646 SUPERFAMILY RNA-binding domain, RBD 30 196 IPR035979 GO:0003676
Glsi01g1271 646 Pfam Poly-adenylate binding protein, unique domain 562 626 IPR002004 GO:0003723
Glsi01g1271 646 PANTHER RNA BINDING PROTEIN 27 91 - -
Glsi01g1271 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723
Glsi01g1271 646 SUPERFAMILY RNA-binding domain, RBD 309 402 IPR035979 GO:0003676
Glsi01g1271 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 194 IPR000504 GO:0003723
Glsi01g1271 646 CDD RRM3_I_PABPs 207 288 - -
Glsi01g1271 646 FunFam Polyadenylate-binding protein 118 191 - -
Glsi01g1271 646 Coils Coil 282 310 - -
Glsi01g1271 646 SUPERFAMILY PABC (PABP) domain 495 631 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi01g1271 Glsi-ChrGlsi01 66152579 66156466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi01g1271 28 639 Eukaryotic Initiation Factors Gene Family AT1G71770 59.713 0.0 717